View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0682_low_35 (Length: 280)
Name: NF0682_low_35
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 51 - 264
Target Start/End: Complemental strand, 7446670 - 7446457
Alignment:
| Q |
51 |
aagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgagaatagaaaaa |
150 |
Q |
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| T |
7446670 |
aagaaccggttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaacttttttagagctaaacgagaatagaaaaa |
7446571 |
T |
|
| Q |
151 |
atatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaacactatagtaat |
250 |
Q |
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| T |
7446570 |
atatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaat |
7446471 |
T |
|
| Q |
251 |
ataatattcttgga |
264 |
Q |
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|||||||| ||||| |
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| T |
7446470 |
ataatattgttgga |
7446457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 7461569 - 7461443
Alignment:
| Q |
140 |
gaatagaaaaaatatcaagaccaccagagaagaaacatggtaacatgcttgccctaaattgacgttactgctgttgtgttgagacaaataaaaacaaaac |
239 |
Q |
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| T |
7461569 |
gaataaaaaaaaaatcaagaccaccagagaagaaacatggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaac |
7461470 |
T |
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| Q |
240 |
actatagtaatataatattcttggaga |
266 |
Q |
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| T |
7461469 |
actatagtaatataatattgttggaga |
7461443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 7461660 - 7461594
Alignment:
| Q |
59 |
gttgcatgctagtgtttcttctctctatcaacaacatttagtggattaaactaagcaaacaactttttta |
128 |
Q |
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|||||||||||||| | |||||||| |||||| ||||| | |||||||||||||||||||||||||| |
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| T |
7461660 |
gttgcatgctagtgcctattctctctttcaaca---tttagggtattaaactaagcaaacaactttttta |
7461594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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