View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0682_low_42 (Length: 250)
Name: NF0682_low_42
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_low_42 |
 | |
|
| [»] scaffold0856 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 27659409 - 27659636
Alignment:
| Q |
3 |
tgcttaaattatatttaatgtttttgtttgtgatgcttacatttt-ttctgatgtttttgctgcattatatttgatgcaataagcttgtaaatcactatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27659409 |
tgcttaaattatatttaatgtttttgtttgtgatgcttacatttttttctgatgttttagctgcattatatttgatgcaataagcttgtaaatcaccatg |
27659508 |
T |
|
| Q |
102 |
tttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgct |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27659509 |
tttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgtggatagttcaaatgct |
27659608 |
T |
|
| Q |
202 |
gttttggattgtggtagtattgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27659609 |
gttttggattgtggtagtattgatgatg |
27659636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37604668 - 37604440
Alignment:
| Q |
1 |
catgcttaaattatatttaatgtttttgtttgtgatgcttacattttttctgatgtttttgctgcattatatttgatgcaataagcttgtaaatcactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37604668 |
catgcttaaattatatttaatgtttttgtttgtgatgcttacgttgtttctgatgtttttgctacattatatttgatgcaataagcttgtaaatcactat |
37604569 |
T |
|
| Q |
101 |
gtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
37604568 |
gtttgcaatataacttattattgatctaattaagtaattttgtgcagttttggtgtgccaatttcacccacaattgaaaatttatggatagttcaaatgt |
37604469 |
T |
|
| Q |
201 |
tgttttggattgtggtagtattgatgatg |
229 |
Q |
| |
|
| || |||||||||||||||||||||||| |
|
|
| T |
37604468 |
tcttgtggattgtggtagtattgatgatg |
37604440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 38776612 - 38776697
Alignment:
| Q |
69 |
atatttgatgcaataagcttgtaaatcactatgtttgcaatataacttattattgatctaattgagtgattttgtgcagttttggt |
154 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||||| |||||||||||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
38776612 |
atattcgatgaaataagcttgtaaatctctatgtttgcaacataacttattatagatcttattgacttcttttgtgcagttttggt |
38776697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 5743129 - 5743228
Alignment:
| Q |
130 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
229 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| |||| || |||||||| || ||||||||||||||||| |||||| |
|
|
| T |
5743129 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggatggtccaaatgcttttgtggattgtggtagtattcatgatg |
5743228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 33360423 - 33360324
Alignment:
| Q |
130 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
229 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
33360423 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
33360324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 670 - 571
Alignment:
| Q |
130 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
229 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
670 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 18084699 - 18084600
Alignment:
| Q |
130 |
ttgagtgattttgtgcagttttggtgtgccaattgcacccacaattgaaaatttgaggatagttcaaatgctgttttggattgtggtagtattgatgatg |
229 |
Q |
| |
|
|||||| ||||||||||| ||||| ||| ||||||| |||||||||||| ||| ||||| | |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
18084699 |
ttgagttattttgtgcagatttggggtgtcaattgcccccacaattgaacattcatggataatccaaatgcttttgtggatagtggtagtattcatgatg |
18084600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 610 times since January 2019
Visitors: 4387