View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0682_low_43 (Length: 248)
Name: NF0682_low_43
Description: NF0682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0682_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 54219121 - 54219201
Alignment:
| Q |
11 |
catctccaagaatatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtctt |
91 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54219121 |
catctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtctt |
54219201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 31217521 - 31217601
Alignment:
| Q |
11 |
catctccaagaatatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtctt |
91 |
Q |
| |
|
|||||||| ||| |||||||| | |||| |||||||||||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
31217521 |
catctccacgaaaatctgaaatatcacatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtctt |
31217601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 17595374 - 17595307
Alignment:
| Q |
15 |
tccaagaatatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
82 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||| ||| ||| ||||| || |||| ||||| |
|
|
| T |
17595374 |
tccaagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 759 times since January 2019
Visitors: 4393