View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_high_1 (Length: 738)
Name: NF0683_high_1
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 194 - 733
Target Start/End: Complemental strand, 26889976 - 26889435
Alignment:
| Q |
194 |
atttgaactcaattacctgctcactgagctgaaacaagttaactacttttgctctactagtgcttcttatcggtagtgttttgatatgaaaggaaacata |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26889976 |
atttgaactcaattacctgctcactgagctgaaacaagttaactacttttgctctactagtgcttcttattggtagtgttttgatatgaaaggaaacata |
26889877 |
T |
|
| Q |
294 |
gcaaaatatgaaacctaataaa--tgaaagactaattaggagttgaagactaaccatgaagaagagcatgcaagctcccattggagagataatcatagac |
391 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26889876 |
gcaaaatatgaaacctaataaaaatgaaagactaattaggagttgaagactaaccatgaagaagagcatgcaagctcccattggagagataatcatagac |
26889777 |
T |
|
| Q |
392 |
aagaagcttttcttccttggcataataataagctctaagtttaacaatgttagggtgtttaagcttcccaatcacatccatatactgttcaaactcatgc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26889776 |
aagaagcttttcttccttggcataataataagctctaagtttaacaatgttagggtgtttaagcttcccaatcacatccatatactgttcaaattcatgc |
26889677 |
T |
|
| Q |
492 |
ctagcacaaggatttgcatctttaagcctcttgacagcaacggtactaccatcatcaagcactgccctataaacagttcccaaattacccttcccaagca |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26889676 |
ctagcacaaggatttgcatctttaagcctcttgacagcaaccgtactaccatcatcaagcactgccctataaacagttcccaaactacccttcccaagca |
26889577 |
T |
|
| Q |
592 |
tctcagcagatgcacgcaacaaatcctccaactcaaatccattcctcctatcaaaaaacacaagcttactcatatcagttccactagtcccatcactact |
691 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26889576 |
tctcagcagatgcacgcaacaaatcttccaactcaaatccattcctcctatcaaaaaacacaagcttactcatatcagttccactagtcccatcactact |
26889477 |
T |
|
| Q |
692 |
atcaccacccccaccatttgaattatacaccttcatctcact |
733 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26889476 |
atcaccacccccaccatttgaattatacaccttcttctcact |
26889435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 46630832 - 46630978
Alignment:
| Q |
7 |
ggaagagggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacaccctc |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630832 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactactcctgtttcaacaacaccctc |
46630931 |
T |
|
| Q |
107 |
aaaggagaagaagagatggagttttagaagatcatcagcaacagcta |
153 |
Q |
| |
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| T |
46630932 |
aaaggagaagaagagatggagttttagaagatcatcagcaacagcta |
46630978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 15505121 - 15505201
Alignment:
| Q |
62 |
aaatggaacagaaaatccaactactcctgtttcaacaacaccctcaaaggagaagaagagatggagttttagaagatcatcagc |
145 |
Q |
| |
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||||||||| |||||||| |||||||| | ||||||||||| ||||||||| | ||||||||||| |||||||||||||| |
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| T |
15505121 |
aaatggaactgaaaatcctactactccaatctcaacaacacc---aaaggagaaaagaagatggagtttcagaagatcatcagc |
15505201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 338 - 652
Target Start/End: Original strand, 41847253 - 41847567
Alignment:
| Q |
338 |
agactaaccatgaagaagagcatgcaagctcccattggagagataatcatagacaagaagcttttcttccttggcataataataagctctaagtttaaca |
437 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||| ||||| ||||| |
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| T |
41847253 |
agacaaaccatgaagaagagcatgcaagcttccattggaaagataatcataaaccaaaagcttttcttccttagcataataataagctttaagtctaaca |
41847352 |
T |
|
| Q |
438 |
atgttagggtgtttaagcttcccaatcacatccatatactgttcaaactcatgcctagcacaaggatttgcatctttaagcctcttgacagcaacggtac |
537 |
Q |
| |
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| ||||| ||| |||||||||| | |||||||||||||||||||||| || |||| |||||||||| ||||| ||||| ||||| |||||||| |||| |
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| T |
41847353 |
acattaggatgtctaagcttccccacaacatccatatactgttcaaactgattcctatcacaaggattagcatccttaagtctcttaacagcaacagtac |
41847452 |
T |
|
| Q |
538 |
taccatcatcaagcactgccctataaacagttcccaaattacccttcccaagcatctcagcagatgcacgcaacaaatcctccaactcaaatccattcct |
637 |
Q |
| |
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||||||||||| || || |||||||||||||||||| ||||||||||||||||||| ||||| || || | ||||||||| |||||||| ||||||| |
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| T |
41847453 |
atccatcatcaagaacagctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcctctaactcaaactcattcct |
41847552 |
T |
|
| Q |
638 |
cctatcaaaaaacac |
652 |
Q |
| |
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|||||||||||||| |
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|
| T |
41847553 |
tctatcaaaaaacac |
41847567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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