View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_high_10 (Length: 433)

Name: NF0683_high_10
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_high_10
NF0683_high_10
[»] chr7 (8 HSPs)
chr7 (21-343)||(34424509-34424831)
chr7 (108-273)||(11916901-11917063)
chr7 (112-194)||(21505295-21505377)
chr7 (381-420)||(34424861-34424900)
chr7 (108-194)||(11917077-11917163)
chr7 (149-193)||(21505184-21505228)
chr7 (108-196)||(21505193-21505281)
chr7 (257-297)||(21508536-21508576)
[»] chr3 (3 HSPs)
chr3 (114-295)||(15047346-15047525)
chr3 (144-196)||(13921211-13921263)
chr3 (146-196)||(15047278-15047328)
[»] chr4 (11 HSPs)
chr4 (92-194)||(20717357-20717459)
chr4 (108-196)||(31589725-31589812)
chr4 (108-196)||(31597373-31597461)
chr4 (113-194)||(20717307-20717388)
chr4 (146-196)||(31589713-31589763)
chr4 (108-196)||(31595165-31595254)
chr4 (226-297)||(12383992-12384063)
chr4 (143-194)||(31595495-31595546)
chr4 (130-196)||(31589495-31589561)
chr4 (108-194)||(31595115-31595201)
chr4 (146-194)||(31597361-31597409)
[»] chr5 (3 HSPs)
chr5 (108-196)||(28710526-28710615)
chr5 (95-297)||(24186545-24186737)
chr5 (143-193)||(24186543-24186593)
[»] chr8 (2 HSPs)
chr8 (154-297)||(31214279-31214422)
chr8 (95-196)||(31215746-31215846)
[»] chr2 (5 HSPs)
chr2 (95-193)||(6880622-6880720)
chr2 (143-223)||(6880641-6880722)
chr2 (153-193)||(6875008-6875048)
chr2 (149-193)||(6875106-6875150)
chr2 (108-180)||(6880586-6880657)
[»] chr1 (1 HSPs)
chr1 (226-297)||(12484317-12484388)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 34424509 - 34424831
Alignment:
Q  21 acatcatcagagcaatgacccaaaatggactcttaatagatcaaaaattaacacacaatcatagcaatattaaggaacaagaatctgacaaagattcaac 120  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  34424509 acataatcagagcaatgacccaaaatggactcttaatagatcaaaaattaacacacaatcatagcaacattaaggaacaataatctgacaaagattcaac 34424608  T
Q  121 aaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaagacctggattcaacaaagattcataa 220  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34424609 aaaagtagttgtaacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaagacctggattcaacaaagattcataa 34424708  T
Q  221 aaacaattaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaatatacaacccttagattgaataaaagaccttttaccttgatatttcgc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34424709 aaacaattaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaatatacaacccttagattgaataaaagaccttttaccttgatattttgc 34424808  T
Q  321 aaatcattgaaatttacgttgaa 343  Q
    |||||| ||||||||||||||||    
T  34424809 aaatcaatgaaatttacgttgaa 34424831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 108 - 273
Target Start/End: Complemental strand, 11917063 - 11916901
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaag-acctggattca 206  Q
    ||||| ||||| |||||||| || ||||||| || |||||||||| |||||   ||||| |||||||||| ||||||||||||||||| || || ||| |    
T  11917063 acaaacattcatcaaaagtaattgtaacaacataaaagaacatgattttaa---agattcatcaaaagtaattataacaacataaaagaacatgaattta 11916967  T
Q  207 acaaagattcataaaaacaattaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaat 273  Q
    |||||||||||| | || | ||||| ||||||| ||  ||||| |||| |||||||||||| |||||    
T  11916966 acaaagattcatcataagagttaag-aaaacactgatggttaaagactcctcgctacccacatgaat 11916901  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 21505295 - 21505377
Alignment:
Q  112 agattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    ||||||| |||||||| |||||| ||| || || ||||||| ||||| ||||||| |||||||||| ||||||||||||||||    
T  21505295 agattcatcaaaagtaattataataacataaaataacatgattttaataaagattcatcaaaagtacttataacaacataaaa 21505377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 34424861 - 34424900
Alignment:
Q  381 cgtatgcctttcttccaacccttgttttcttttgttgtct 420  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  34424861 cgtatgcctttcttccaaccctagttttcttttgctgtct 34424900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 11917163 - 11917077
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    |||||||||||  ||||||| |||  ||||| || |||||||| ||||||| ||| ||| ||| ||| || ||||||||||||||||    
T  11917163 acaaagattcatgaaaagtaattacgacaacataaaagaacataaatttaataaatattcatcgaaaataattataacaacataaaa 11917077  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 21505184 - 21505228
Alignment:
Q  149 atgaatttaacaaagatttatcaaaagtagttataacaacataaa 193  Q
    ||||||||||||||| || |||||||||||||| ||| |||||||    
T  21505184 atgaatttaacaaaggttcatcaaaagtagttacaactacataaa 21505228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 21505193 - 21505281
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    |||||| |||| |||||||||||| ||| || || | |||||| |||| |||||| ||| ||| |||||| ||| ||||||||| ||||    
T  21505193 acaaaggttcatcaaaagtagttacaactacataaaggaacataaattcaacaaacattcatcgaaagtaattacaacaacatacaaga 21505281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 21508536 - 21508576
Alignment:
Q  257 tcgctacccacgtgaatatacaacccttagattgaataaaa 297  Q
    ||||||||||| | |||||||||| ||||||||||||||||    
T  21508536 tcgctacccacataaatatacaactcttagattgaataaaa 21508576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 295
Target Start/End: Original strand, 15047346 - 15047525
Alignment:
Q  114 attcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaagacctggattc-aacaaag 212  Q
    ||||| |||||||| ||||||| || || |||||||  | |||||||| |||| ||||   |||||||||||||||||||||| |  ||||  ||||| |    
T  15047346 attcatcaaaagtaattataacgacataaaagaacacaattttaacaaggattcatca---gtagttataacaacataaaagaacatgattttaacaagg 15047442  T
Q  213 attcataaaaacaattaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaatatacaacccttagattgaataa 295  Q
    |||||| |||| |||| |  ||||||||| | ||||| |||| |||| ||||||| ||||||||||||||||| |||||||||    
T  15047443 attcatcaaaagaatttaagaaaacaccggaggttaaagactcctcgatacccacatgaatatacaacccttaaattgaataa 15047525  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 13921211 - 13921263
Alignment:
Q  144 agaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    ||||||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  13921211 agaacatgaatttaacaaagactcatcaaaagtaattacaacaacataaaaga 13921263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 15047278 - 15047328
Alignment:
Q  146 aacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    ||||||| |||||||| |||| || ||||||| ||||||||||||||||||    
T  15047278 aacatgattttaacaatgattcataaaaagtaattataacaacataaaaga 15047328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 194
Target Start/End: Complemental strand, 20717459 - 20717357
Alignment:
Q  92 aaggaacaagaatctgacaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacata 191  Q
    |||||||| |||| | |||| |||||| |||||||| |||||||||| || || ||||||| ||||| || |||| |||||||||| |||||||||||||    
T  20717459 aaggaacatgaatttaacaaggattcatcaaaagtaattataacaacataaaataacatgattttaaaaaggattcatcaaaagtaattataacaacata 20717360  T
Q  192 aaa 194  Q
    |||    
T  20717359 aaa 20717357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 31589725 - 31589812
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    |||| |||||| |||||||| |||||||||| || |||||||||| |||||||| |||| ||||||||||||||||| || ||||||||    
T  31589725 acaaggattcatcaaaagtaattataacaacataaaagaacatgattttaacaaggatt-atcaaaagtagttataagaatataaaaga 31589812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 31597373 - 31597461
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    |||| |||||| ||||| || |||||||||| || || ||||||| ||||| |||||||||||||||||| ||||||||| ||||||||    
T  31597373 acaaggattcatcaaaattaattataacaacataaaataacatgattttaataaagatttatcaaaagtaattataacaagataaaaga 31597461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 20717388 - 20717307
Alignment:
Q  113 gattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    |||||| |||||||| |||||||||| || || ||||||| ||||| || |||| |||||||||| ||||||||||||||||    
T  20717388 gattcatcaaaagtaattataacaacataaaataacatgattttaagaaggattcatcaaaagtaattataacaacataaaa 20717307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 31589713 - 31589763
Alignment:
Q  146 aacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    |||||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  31589713 aacatgaatttaacaaggattcatcaaaagtaattataacaacataaaaga 31589763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 31595165 - 31595254
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaag-tagttataacaacataaaaga 196  Q
    ||||| ||||| |||||||| |||||||| | || || ||||||| ||||||||| ||| |||||||  |||||||||||||||||||||    
T  31595165 acaaaaattcatcaaaagtaattataacagcataaaataacatgattttaacaaaaattcatcaaaaaatagttataacaacataaaaga 31595254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 12384063 - 12383992
Alignment:
Q  226 attaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaatatacaacccttagattgaataaaa 297  Q
    |||||| ||||||  ||| |||| ||||| ||| ||||||||||||||||| |||||||| |||||||||||    
T  12384063 attaagtaaaacattgaaggttagggactcctcactacccacgtgaatataaaacccttatattgaataaaa 12383992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 31595495 - 31595546
Alignment:
Q  143 aagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    |||| ||||| |||||||||||||||||||||||| |||||||| |||||||    
T  31595495 aagatcatgagtttaacaaagatttatcaaaagtatttataacaccataaaa 31595546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 31589495 - 31589561
Alignment:
Q  130 tataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    ||||||||| || |||||||||  |||||||| ||||  ||||||||| ||||||||||||||||||    
T  31589495 tataacaacataaaagaacatgtttttaacaatgattcgtcaaaagtaattataacaacataaaaga 31589561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 31595115 - 31595201
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    ||||||||||| |||||||| ||| |||||   | | |||||| ||||||||||| ||| |||||||||| |||||||| |||||||    
T  31595115 acaaagattcatcaaaagtatttacaacaatacaaaggaacataaatttaacaaaaattcatcaaaagtaattataacagcataaaa 31595201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 31597361 - 31597409
Alignment:
Q  146 aacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    ||||||| |||||||| |||| ||||||| || ||||||||||||||||    
T  31597361 aacatgattttaacaaggattcatcaaaattaattataacaacataaaa 31597409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 28710615 - 28710526
Alignment:
Q  108 acaaagattcaacaaaa-gtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaaga 196  Q
    ||||||||||| ||||| ||| |||||||||| || || ||||||| ||||||||||||| ||||||||||  |||||||||||||||||    
T  28710615 acaaagattcatcaaaaagtaattataacaacataaaataacatgattttaacaaagattcatcaaaagtaactataacaacataaaaga 28710526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 297
Target Start/End: Original strand, 24186545 - 24186737
Alignment:
Q  95 gaacaagaatctgacaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    ||||| |||| | ||||||||||| | ||| || ||| |||||| || | |||||||| ||||||||||||| ||| ||| || |||||||||||| |      
T  24186545 gaacatgaatttaacaaagattcatcgaaaataattacaacaacataaatgaacatgattttaacaaagattcatccaaattaattataacaacatgag- 24186643  T
Q  195 gacctggattcaacaaagattcataaaaacaattaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaatatacaacccttagattgaata 294  Q
            || ||||| ||||||| | || | ||||||||| ||  |||||||||||||| |||||||||||| ||||||||| |||| | |||||||||    
T  24186644 --------tttaacaacgattcatcataaaagttaagaaaa-cattgaaagttaaggactcctcgctacccacatgaatatactacccatggattgaata 24186734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 24186543 - 24186593
Alignment:
Q  143 aagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaa 193  Q
    |||||||||||||||||||||||| ||| ||| || ||| |||||||||||    
T  24186543 aagaacatgaatttaacaaagattcatcgaaaataattacaacaacataaa 24186593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 297
Target Start/End: Complemental strand, 31214422 - 31214279
Alignment:
Q  154 tttaacaaagatttatcaaaagtagttataacaacataaaagacc-tggattcaacaaagattcataaaaacaattaagaaaaacaccgaaagttaagga 252  Q
    |||||| |||||| |||||||||| ||||||||||||||||||   |  ||| ||| |||||||||   || | ||||||||| ||||| ||||||||||    
T  31214422 tttaactaagattcatcaaaagtaattataacaacataaaagaatataaatttaaccaagattcatcgtaagagttaagaaaa-caccggaagttaagga 31214324  T
Q  253 cttctcgctacccacgtgaatatacaacccttagattgaataaaa 297  Q
    || |||||||||| | ||||||||   ||||||||||||||||||    
T  31214323 ctcctcgctacccccatgaatatatttcccttagattgaataaaa 31214279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 31215846 - 31215746
Alignment:
Q  95 gaacaagaatctgacaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaaa 194  Q
    ||||| |||| | |||||||||||  |||| || ||| |||||| |||| |||||| ||||||||||||||| ||| ||||||||||  |||| ||||||    
T  31215846 gaacatgaatttaacaaagattcataaaaa-taattacaacaacatagatgaacataaatttaacaaagattcatcgaaagtagttacgacaaaataaaa 31215748  T
Q  195 ga 196  Q
    ||    
T  31215747 ga 31215746  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 6880720 - 6880622
Alignment:
Q  95 gaacaagaatctgacaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaa 193  Q
    ||||| |||| | ||||||||||| |||||||| ||| |||||   | |  ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  6880720 gaacatgaatttaacaaagattcatcaaaagtaattacaacaatacaaataaacatgaatttaacaaagattcatcaaaagtaattataacaacataaa 6880622  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 223
Target Start/End: Complemental strand, 6880722 - 6880641
Alignment:
Q  143 aagaacatgaatttaacaaagatttatcaaaagtagttataacaacataaa-agacctggattcaacaaagattcataaaaa 223  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||| | ||| | || || ||| ||||||||||||| ||||    
T  6880722 aagaacatgaatttaacaaagattcatcaaaagtaattacaacaatacaaataaacatgaatttaacaaagattcatcaaaa 6880641  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 6875048 - 6875008
Alignment:
Q  153 atttaacaaagatttatcaaaagtagttataacaacataaa 193  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  6875048 atttaacaaggatttatcaaaagtaattataacaacataaa 6875008  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 6875150 - 6875106
Alignment:
Q  149 atgaatttaacaaagatttatcaaaagtagttataacaacataaa 193  Q
    ||||||||| |||||||| |||||||||| |||||||||||||||    
T  6875150 atgaatttagcaaagattcatcaaaagtaattataacaacataaa 6875106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 6880657 - 6880586
Alignment:
Q  108 acaaagattcaacaaaagtagttataacaacttagaagaacatgaatttaacaaagatttatcaaaagtagtt 180  Q
    ||||||||||| |||||||| |||||||||| || || ||||||| |||||||| |||| ||||||| |||||    
T  6880657 acaaagattcatcaaaagtaattataacaacata-aataacatgattttaacaatgattcatcaaaaatagtt 6880586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 12484388 - 12484317
Alignment:
Q  226 attaagaaaaacaccgaaagttaaggacttctcgctacccacgtgaatatacaacccttagattgaataaaa 297  Q
    |||||||||||||  ||| |||| ||||| |||  |||| || ||||||||||||||||| |||||||||||    
T  12484388 attaagaaaaacattgaaggttagggactcctcagtacctacatgaatatacaacccttacattgaataaaa 12484317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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