View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_high_11 (Length: 404)

Name: NF0683_high_11
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_high_11
NF0683_high_11
[»] chr5 (14 HSPs)
chr5 (225-404)||(14891304-14891481)
chr5 (21-205)||(14891126-14891315)
chr5 (295-391)||(14872873-14872969)
chr5 (46-126)||(4592893-4592980)
chr5 (55-135)||(19182973-19183060)
chr5 (46-133)||(546040-546134)
chr5 (46-148)||(2466778-2466887)
chr5 (46-148)||(8074461-8074570)
chr5 (46-148)||(28591118-28591227)
chr5 (46-131)||(2464696-2464788)
chr5 (46-78)||(16611815-16611847)
chr5 (102-149)||(9537032-9537079)
chr5 (50-81)||(18004722-18004753)
chr5 (21-81)||(32641705-32641765)
[»] chr2 (11 HSPs)
chr2 (21-148)||(31091506-31091640)
chr2 (46-148)||(32766243-32766352)
chr2 (23-131)||(39016364-39016477)
chr2 (87-135)||(7412115-7412163)
chr2 (46-81)||(14704090-14704125)
chr2 (46-80)||(7073724-7073758)
chr2 (46-78)||(26586299-26586331)
chr2 (46-110)||(32764986-32765057)
chr2 (46-78)||(33163462-33163494)
chr2 (46-78)||(34582674-34582706)
chr2 (46-78)||(37607189-37607221)
[»] chr7 (16 HSPs)
chr7 (46-148)||(48646059-48646168)
chr7 (46-148)||(48788676-48788785)
chr7 (46-148)||(10899077-10899186)
chr7 (61-148)||(44333149-44333243)
chr7 (46-148)||(35727709-35727817)
chr7 (46-78)||(43461732-43461764)
chr7 (21-81)||(13578300-13578359)
chr7 (46-81)||(45584500-45584535)
chr7 (46-76)||(33060899-33060929)
chr7 (49-131)||(44334456-44334545)
chr7 (24-126)||(34888905-34889014)
chr7 (46-126)||(7259688-7259775)
chr7 (90-142)||(8374930-8374982)
chr7 (46-78)||(8375001-8375033)
chr7 (46-78)||(30925012-30925044)
chr7 (56-148)||(43457467-43457566)
[»] chr4 (7 HSPs)
chr4 (21-81)||(39869004-39869064)
chr4 (46-81)||(19050322-19050357)
chr4 (46-148)||(47878488-47878597)
chr4 (49-78)||(26685429-26685458)
chr4 (90-139)||(54574444-54574493)
chr4 (46-78)||(25810417-25810449)
chr4 (90-130)||(42391943-42391983)
[»] chr3 (8 HSPs)
chr3 (46-122)||(53959104-53959187)
chr3 (21-81)||(36280296-36280356)
chr3 (46-148)||(52318321-52318430)
chr3 (46-131)||(17700545-17700637)
chr3 (46-131)||(17701923-17702015)
chr3 (46-81)||(47075355-47075390)
chr3 (46-81)||(49261541-49261576)
chr3 (46-78)||(19114620-19114652)
[»] chr1 (14 HSPs)
chr1 (46-142)||(5782430-5782533)
chr1 (46-146)||(7945558-7945665)
chr1 (46-148)||(32665774-32665883)
chr1 (87-148)||(44019996-44020057)
chr1 (46-146)||(32664525-32664623)
chr1 (46-81)||(9339730-9339765)
chr1 (52-131)||(10333196-10333282)
chr1 (46-81)||(22856764-22856799)
chr1 (90-148)||(6612429-6612487)
chr1 (87-148)||(8975169-8975230)
chr1 (46-78)||(9341029-9341061)
chr1 (21-78)||(22857558-22857615)
chr1 (21-70)||(33342511-33342560)
chr1 (46-78)||(44720853-44720885)
[»] chr8 (9 HSPs)
chr8 (46-81)||(5965446-5965481)
chr8 (46-148)||(32898449-32898558)
chr8 (46-148)||(35178808-35178917)
chr8 (90-147)||(33314872-33314929)
chr8 (46-131)||(35177422-35177514)
chr8 (90-131)||(41754850-41754891)
chr8 (46-81)||(1952974-1953009)
chr8 (46-78)||(28524845-28524877)
chr8 (116-148)||(43539115-43539147)
[»] chr6 (1 HSPs)
chr6 (46-76)||(31219164-31219194)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 9e-86; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 225 - 404
Target Start/End: Original strand, 14891304 - 14891481
Alignment:
Q  225 gatccggcccatgaggcaagcaccttcttttctgtctgcgcgtccttcctagttcagtaacattccgagtgagaacacgaaatggcgtcgaactgtagtc 324  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14891304 gatccggcccatgaggcaagcaccttctt--ctgtctgcgcgtccttcctagttcagtaacattctgagtgagaacacgaaatggcgtcgaactgtagtc 14891401  T
Q  325 ggaaatgtttccaaatagcttcatcttcttctaaaaccctattatctcgtcgatctccttcttcttcaaactcctgtaaa 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14891402 ggaaatgtttccaaatagcttcatcttcttctaaaaccctattatctcgtcgatcttcttcttcttcaaactcctgtaaa 14891481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 14891126 - 14891315
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag---gggacttatatttaatcatgagtcagagatatatgt 117  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||   | |||||  ||||||||||||||||||||  |||||    
T  14891126 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgtagagtcagagacttgcatttaatcatgagtcagagacctatgt 14891225  T
Q  118 gacagcgaggtgcaaagtgagggaccaaagt--ctatttgcacaattcttgaaagcccgtatttgctgtgggtaaaatgatccgccccat 205  Q
    |||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||| |||||| ||||||||||| |||||| |||||    
T  14891226 gacagcgaggtgcagagtgagggaccaaagtgactatttgctcaattcttgaaagcccatatttgttgtgggtaaaaagatccggcccat 14891315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 14872873 - 14872969
Alignment:
Q  295 gagaacacgaaatggcgtcgaactgtagtcggaaatgtttccaaatagcttcatcttcttctaaaaccctattatctcgtcgatctccttcttcttc 391  Q
    ||||||||||||||||||||||||||  | | |||| | ||  |||||||||||||||  | |||||| |||| ||||| |||||||||||||||||    
T  14872873 gagaacacgaaatggcgtcgaactgtgctagaaaatctctcggaatagcttcatcttccgccaaaaccttattttctcgccgatctccttcttcttc 14872969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 4592980 - 4592893
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgag 126  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  ||||||||||||||    
T  4592980 aacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacttatgtgacagcgag 4592893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 19183060 - 19182973
Alignment:
Q  55 gactaaagtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagt 135  Q
    |||||||||||||||||||||| ||||   || ||||||    |||||||| |||||||||||  |||||||||||||||||||||||    
T  19183060 gactaaagtgataacggaagtgtagagtcaggaacttatttgtatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagt 19182973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 546040 - 546134
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaa 133  Q
    |||||||| |||||||||||||||||||||||||||    |||||||    ||||||||| |||||||| ||  |||||||||||||| ||||||    
T  546040 aacgtcagggactaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctatgtgacagcgagctgcaaa 546134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 2466778 - 2466887
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||    ||||||||| ||| |||  ||  ||||||| ||||||||||| ||| ||    
T  2466778 aacgtcagggactaaagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacctatgtgatagcgaggtgcagagtcag 2466877  T
Q  139 ggaccaaagt 148  Q
     |||||||||    
T  2466878 agaccaaagt 2466887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 8074570 - 8074461
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    ||||||||  ||||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  |||||||||||||| |||| | | ||    
T  8074570 aacgtcaggaactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcag 8074471  T
Q  139 ggaccaaagt 148  Q
    |||| |||||    
T  8074470 ggactaaagt 8074461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 28591118 - 28591227
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||| | |||||||||||||| ||||||||||||   |||| ||||    |||||||| |||||||| ||  ||||||||||||||||||| ||| ||    
T  28591118 aacgtcggggactaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcag 28591217  T
Q  139 ggaccaaagt 148  Q
    ||| ||||||    
T  28591218 ggatcaaagt 28591227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 2464788 - 2464696
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    ||||||||||||||||||||||||| ||||||||||   ||||||||    |||||||||||||||||  ||  ||| |||||||||| ||||    
T  2464788 aacgtcagagactaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacctatatgacagcgagctgca 2464696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 16611847 - 16611815
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||||||||||||||||||||    
T  16611847 aacgtcagagactaaagtgataacggaagtgca 16611815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 9537079 - 9537032
Alignment:
Q  102 agtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagtc 149  Q
    |||||||||  ||||||||||||||||||| |||||||||| ||||||    
T  9537079 agtcagagacctatgtgacagcgaggtgcagagtgagggactaaagtc 9537032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 18004753 - 18004722
Alignment:
Q  50 tcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||||||||||||||||    
T  18004753 tcagagactaaagtgataacggaagtgcagag 18004722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 32641705 - 32641765
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||       |||||||| || ||||||||||||||||||||||||    
T  32641705 acatcatcacttaacatatttttttaacgtcagggattaaagtgataacggaagtgcagag 32641765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 31091506 - 31091640
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatat 113  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  |    
T  31091506 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacct 31091605  T
Q  114 atgtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    |||||||||| ||||||| ||| ||||||||||||    
T  31091606 atgtgacagcaaggtgcagagtcagggaccaaagt 31091640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 32766243 - 32766352
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||  |||||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  ||||||||| ||||||||| ||| ||    
T  32766243 aacgtcaaggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcag 32766342  T
Q  139 ggaccaaagt 148  Q
    ||||||||||    
T  32766343 ggaccaaagt 32766352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 39016364 - 39016477
Alignment:
Q  23 atcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagaggggactta----tatttaatcatgagtc--agagatatatg 116  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||| | ||||||    ||||||||| ||||||  |||||| ||||    
T  39016364 atcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcaga-gtgacttatttgtatttaatcctgagtcagagagatgtatg 39016462  T
Q  117 tgacagcgaggtgca 131  Q
    |||||||||| ||||    
T  39016463 tgacagcgagctgca 39016477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 7412163 - 7412115
Alignment:
Q  87 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagt 135  Q
    |||||||||||| |||||||||||| ||||||||| |||||| ||||||    
T  7412163 ttatatttaatcttgagtcagagatctatgtgacaacgaggtacaaagt 7412115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 14704125 - 14704090
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||||| |||||||||||||||||||||||||||    
T  14704125 aacgtcagggactaaagtgataacggaagtgcagag 14704090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 7073758 - 7073724
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcaga 80  Q
    |||||||| ||||||||||||||||||||||||||    
T  7073758 aacgtcagggactaaagtgataacggaagtgcaga 7073724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 26586299 - 26586331
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||| ||||||||||||||||||||||||||||    
T  26586299 aacgccagagactaaagtgataacggaagtgca 26586331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 32765057 - 32764986
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagaga 110  Q
    |||||||| || ||||||||||||||||||||||||   ||||||||    ||||||||| |||||||||||    
T  32765057 aacgtcagggattaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagaga 32764986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 33163462 - 33163494
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||||||||||||||| ||||    
T  33163462 aacgtcagagactaaagtgataacggaaatgca 33163494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 34582674 - 34582706
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||| ||||||||||||||||||||||||    
T  34582674 aacgtcagggactaaagtgataacggaagtgca 34582706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 37607221 - 37607189
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||| ||||||||||||||||||||||||    
T  37607221 aacgtcagggactaaagtgataacggaagtgca 37607189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 48646168 - 48646059
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||| |||||||||||||||||||||||||| ||||   ||||||||    ||||||||| |||||||| ||  ||||||||||||||||||| ||| ||    
T  48646168 aacgacagagactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcag 48646069  T
Q  139 ggaccaaagt 148  Q
    ||||||||||    
T  48646068 ggaccaaagt 48646059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 48788676 - 48788785
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggac----ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    ||||||||||||||||||||||||||||||||||||   | |||    ||||||||||| ||||||||| ||  ||||||||||||||||||||||| |     
T  48788676 aacgtcagagactaaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaa 48788775  T
Q  139 ggaccaaagt 148  Q
    ||| ||||||    
T  48788776 ggatcaaagt 48788785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 10899077 - 10899186
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| |||||||||||||||||||||||||||   | ||||||    ||||||||| || ||||  ||| ||||||||||||||||||| ||| ||    
T  10899077 aacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatctatgtgacagcgaggtgcagagtcag 10899176  T
Q  139 ggaccaaagt 148  Q
    ||||||||||    
T  10899177 ggaccaaagt 10899186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Complemental strand, 44333243 - 44333149
Alignment:
Q  61 agtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    |||||||||||||||||||||   | |||||||    ||||||||||||||||| ||  ||||||||||||||||||| ||| ||||||||||||    
T  44333243 agtgataacggaagtgcagagtcagagacttatttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagt 44333149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 35727817 - 35727709
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| |||||||||||||||||| ||||||||   | |||||||    |||||||| |||||||| ||  ||||||||||||||||||| ||| ||    
T  35727817 aacgtcag-gactaaagtgataacggatgtgcagagtcagagacttatttatatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcag 35727719  T
Q  139 ggaccaaagt 148  Q
    ||| ||||||    
T  35727718 ggatcaaagt 35727709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 43461732 - 43461764
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||||||||||||||||||||    
T  43461732 aacgtcagagactaaagtgataacggaagtgca 43461764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 13578300 - 13578359
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||       |||||||| |||||||||||||||||||||||||||    
T  13578300 acatcatcacttaacataattatttaacgtcag-gactaaagtgataacggaagtgcagag 13578359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 45584500 - 45584535
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||||| |||||||||||||||||||||||||||    
T  45584500 aacgtcagggactaaagtgataacggaagtgcagag 45584535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 33060929 - 33060899
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtg 76  Q
    |||||||||||||||||||||||||||||||    
T  33060929 aacgtcagagactaaagtgataacggaagtg 33060899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 44334456 - 44334545
Alignment:
Q  49 gtcagagactaaagtgataacggaagtgcagag---gggac----ttatatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    ||||| |||||||||||||| ||||||||||||   |||||    ||||||||||||||||||||| ||  ||||| |||||||| ||||    
T  44334456 gtcagggactaaagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacctatgtaacagcgagctgca 44334545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 34888905 - 34889014
Alignment:
Q  24 tcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag---gggac----ttatatttaatcatgagtcagagatatatg 116  Q
    |||||||||||||||       |||||||  |||||||||||||||||||||||||||    ||||    |||||||||||||||||| |||||  | ||    
T  34888905 tcatcacttaacataattattaaacgtcaaggactaaagtgataacggaagtgcagagttaaggacatctttatatttaatcatgagtgagagacctttg 34889004  T
Q  117 tgacagcgag 126  Q
    ||||||||||    
T  34889005 tgacagcgag 34889014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 7259688 - 7259775
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgag 126  Q
    |||||||| |||||||||||||||||||||| ||||   ||||||||    ||||||||| ||| |||||||   |||||||||||||    
T  7259688 aacgtcagggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgaatcagagacccatgtgacagcgag 7259775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 8374982 - 8374930
Alignment:
Q  90 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggac 142  Q
    ||||||||  |||||||||||  ||||||||||||||||||| ||| ||||||    
T  8374982 tatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggac 8374930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 8375033 - 8375001
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    ||||||| |||||||||||||||||||||||||    
T  8375033 aacgtcaaagactaaagtgataacggaagtgca 8375001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 30925012 - 30925044
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||||| ||||||||||||||    
T  30925012 aacgtcagagactaaagtaataacggaagtgca 30925044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 43457566 - 43457467
Alignment:
Q  56 actaaagtgataacggaagtgcaga---ggggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    |||||||||||||||||||||||||   |||||||||    ||||||||| |||||||| ||  |||| ||||||||| |||| | | |||||| |||||    
T  43457566 actaaagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaagt 43457467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 39869064 - 39869004
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  39869064 acatcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagag 39869004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 19050357 - 19050322
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||| |||||||||||||||||||||||||||||    
T  19050357 aacgtcggagactaaagtgataacggaagtgcagag 19050322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 47878488 - 47878597
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||  |||||||||||||||||||||| ||||   ||||||||    |||||||||  ||||||| ||  ||||| ||||||||||||| ||| ||    
T  47878488 aacgtcatggactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtcag 47878587  T
Q  139 ggaccaaagt 148  Q
    ||| ||||||    
T  47878588 ggatcaaagt 47878597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 26685429 - 26685458
Alignment:
Q  49 gtcagagactaaagtgataacggaagtgca 78  Q
    ||||||||||||||||||||||||||||||    
T  26685429 gtcagagactaaagtgataacggaagtgca 26685458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 54574493 - 54574444
Alignment:
Q  90 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagg 139  Q
    ||||||||| |||||||||||  |||||||||||||| |||| |||||||    
T  54574493 tatttaatcctgagtcagagacctatgtgacagcgagatgcagagtgagg 54574444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 25810417 - 25810449
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||||||||| ||||||||||    
T  25810417 aacgtcagagactaaagtgatagcggaagtgca 25810449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 42391943 - 42391983
Alignment:
Q  90 tatttaatcatgagtcagagatatatgtgacagcgaggtgc 130  Q
    |||||||||||||||||||||  |||||||||| |||||||    
T  42391943 tatttaatcatgagtcagagacctatgtgacagtgaggtgc 42391983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 53959104 - 53959187
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacag 122  Q
    ||||||||||||||||||||||||||||||||||||    | |||||    |||||||||||||||||||||  ||||||||||    
T  53959104 aacgtcagagactaaagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagacctatgtgacag 53959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 36280296 - 36280356
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||       |||||||| |||||||||||||||||||||||||||    
T  36280296 acatcatcacttaacatatttttttaacgtcagggactaaagtgataacggaagtgcagag 36280356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 52318321 - 52318430
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| ||||||||| ||| | |||||||||||   ||||||||    ||||||||| |||||||| ||| ||||||||||||| ||||| ||| ||    
T  52318321 aacgtcagggactaaagtaatatcagaagtgcagagtcagggacttatttgtatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcag 52318420  T
Q  139 ggaccaaagt 148  Q
     |||||||||    
T  52318421 agaccaaagt 52318430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 17700637 - 17700545
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||    ||||||||| ||||||||  |  ||||||||| |||||||||    
T  17700637 aacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgca 17700545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 17701923 - 17702015
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||    ||||||||| |||||||| ||  ||| |||||||||| ||||    
T  17701923 aacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgca 17702015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 47075355 - 47075390
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||||||||||||||| ||||    
T  47075355 aacgtcagagactaaagtgataacggaagtgtagag 47075390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 49261541 - 49261576
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||||||||||||||||||||||||| |||||||    
T  49261541 aacgtcagagactaaagtgataacggaaatgcagag 49261576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 19114652 - 19114620
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    ||||| |||||||||||||||||||||||||||    
T  19114652 aacgtaagagactaaagtgataacggaagtgca 19114620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 5782533 - 5782430
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcaga---ggggac----ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    ||||||||||||||||||||||| ||||||||| |    | |||    || |||||||||||||||||||||  ||||||||||||||||||| ||| ||    
T  5782533 aacgtcagagactaaagtgataagggaagtgcataatcagagacttctttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcag 5782434  T
Q  139 ggac 142  Q
    ||||    
T  5782433 ggac 5782430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 7945558 - 7945665
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| |||||||||||||||||||||||| ||   | ||||||    ||||||||| ||||||||  |  ||||||||||||||||||| ||| ||    
T  7945558 aacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcagagtcag 7945657  T
Q  139 ggaccaaa 146  Q
    ||||||||    
T  7945658 ggaccaaa 7945665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 32665774 - 32665883
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagaggg---gacttat----atttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||| ||| |||||||||||||||||||||||||||     |||||||    ||||||||||||||||||||  |||||||||||||| |||| | | ||    
T  32665774 aacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacctatgtgacagcgagctgcagaatcag 32665873  T
Q  139 ggaccaaagt 148  Q
    |||| |||||    
T  32665874 ggactaaagt 32665883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 44020057 - 44019996
Alignment:
Q  87 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    |||||||||||| |||||||||||  | ||||||| |||| |||||||| ||||||||||||    
T  44020057 ttatatttaatcttgagtcagagacttttgtgacaacgagttgcaaagtcagggaccaaagt 44019996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 32664623 - 32664525
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagaggggacttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaa 145  Q
    |||||||  |||||||||||||||||||||||||||   | || ||||||||| ||||||| |||  ||| | ||||||||||||| ||||||| |||||    
T  32664623 aacgtcaaggactaaagtgataacggaagtgcagagtt-atttgtatttaatcctgagtca-agacctatataacagcgaggtgcagagtgaggaaccaa 32664526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 9339765 - 9339730
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||||| |||||||||||||||||||||||||||    
T  9339765 aacgtcagggactaaagtgataacggaagtgcagag 9339730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 10333196 - 10333282
Alignment:
Q  52 agagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    ||||||||||||||||||||||||||||||   | ||||||    ||||||||| |||||||||||  ||||| |||||||| ||||    
T  10333196 agagactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacctatgtaacagcgagctgca 10333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Complemental strand, 22856799 - 22856764
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||| |||||||||||||||||||||||||||||    
T  22856799 aacgtcggagactaaagtgataacggaagtgcagag 22856764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 6612487 - 6612429
Alignment:
Q  90 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    ||||||||||||||||||||| || | | ||||||||||||| ||| |||||| |||||    
T  6612487 tatttaatcatgagtcagagacatttataacagcgaggtgcagagtcagggactaaagt 6612429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 8975230 - 8975169
Alignment:
Q  87 ttatatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    |||||||||||| |||||||| ||  | ||||||| | ||||||||||| ||||||||||||    
T  8975230 ttatatttaatcttgagtcagggacctttgtgacaacaaggtgcaaagttagggaccaaagt 8975169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 9341029 - 9341061
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||||||||||| ||||||||    
T  9341029 aacgtcagagactaaagtgataacagaagtgca 9341061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 22857558 - 22857615
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacggaagtgca 78  Q
    ||||||||||||||||||       |||||||  ||||||||||||||||||||||||    
T  22857558 acatcatcacttaacataattatttaacgtcatggactaaagtgataacggaagtgca 22857615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 33342560 - 33342511
Alignment:
Q  21 acatcatcacttaacatannnnnnnaacgtcagagactaaagtgataacg 70  Q
    ||||||||||||||||||       |||||||||||||||||||||||||    
T  33342560 acatcatcacttaacataattatttaacgtcagagactaaagtgataacg 33342511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 44720853 - 44720885
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    ||||||||||||||||||||||| |||||||||    
T  44720853 aacgtcagagactaaagtgataatggaagtgca 44720885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 5965446 - 5965481
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    ||||||||||||||||||||||||||||||||||||    
T  5965446 aacgtcagagactaaagtgataacggaagtgcagag 5965481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 32898449 - 32898558
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||    ||||||||| | |||||| ||  |||||||||| ||| |||| ||| ||    
T  32898449 aacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacctatgtgacagtgagttgcagagtcag 32898548  T
Q  139 ggaccaaagt 148  Q
    |||| |||||    
T  32898549 ggactaaagt 32898558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 35178808 - 35178917
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcaga---ggggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgag 138  Q
    |||||||| ||||||||||||||||||||||||||    ||||||||    ||||||||| |||||||| ||   || ||||||||| ||||| ||| ||    
T  35178808 aacgtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcagagtcag 35178907  T
Q  139 ggaccaaagt 148  Q
    ||||||||||    
T  35178908 ggaccaaagt 35178917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 33314929 - 33314872
Alignment:
Q  90 tatttaatcatgagtcagagatatatgtgacagcgaggtgcaaagtgagggaccaaag 147  Q
    ||||||||| |||||||||||  | || |||||||||||||||||| |||||||||||    
T  33314929 tatttaatcttgagtcagagacctttgagacagcgaggtgcaaagtaagggaccaaag 33314872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 35177514 - 35177422
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag---gggactta----tatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    |||||||| |||||||||||||||||||||||||||   ||||||||    |||||||||  ||||||| ||  |||||||||||||| ||||    
T  35177514 aacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacctatgtgacagcgagctgca 35177422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 41754850 - 41754891
Alignment:
Q  90 tatttaatcatgagtcagagatatatgtgacagcgaggtgca 131  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  41754850 tatttaatcctgagtcagagatctatgtgacagcgaggtgca 41754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 1952974 - 1953009
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgcagag 81  Q
    |||||||||||||||||||||||||||||| |||||    
T  1952974 aacgtcagagactaaagtgataacggaagtacagag 1953009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 28524877 - 28524845
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtgca 78  Q
    |||||||||||||||| ||||||||||||||||    
T  28524877 aacgtcagagactaaaatgataacggaagtgca 28524845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 43539147 - 43539115
Alignment:
Q  116 gtgacagcgaggtgcaaagtgagggaccaaagt 148  Q
    |||||||||||||||||||| ||||||||||||    
T  43539147 gtgacagcgaggtgcaaagttagggaccaaagt 43539115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 31219164 - 31219194
Alignment:
Q  46 aacgtcagagactaaagtgataacggaagtg 76  Q
    |||||||||||||||||||||||||||||||    
T  31219164 aacgtcagagactaaagtgataacggaagtg 31219194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1159 times since January 2019
Visitors: 4407