View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_high_17 (Length: 296)
Name: NF0683_high_17
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 47075572 - 47075407
Alignment:
| Q |
75 |
gcatacagaattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagctta |
174 |
Q |
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| T |
47075572 |
gcatccagaattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagctta |
47075473 |
T |
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| Q |
175 |
actgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075472 |
actgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcat |
47075407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 47057921 - 47057819
Alignment:
| Q |
83 |
aattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagcttaactgtaaa |
182 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |||| |||||| | ||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
47057921 |
aattaagattatggactttgtgtgacattagtgtctct---gtttgtgtgtgctatgg--aacagatagtgaccaaaccaagccgaagcttaaccttaaa |
47057827 |
T |
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| Q |
183 |
gcttcaaa |
190 |
Q |
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|||||||| |
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| T |
47057826 |
gcttcaaa |
47057819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 239
Target Start/End: Original strand, 18229862 - 18229958
Alignment:
| Q |
143 |
aacagatagtgaccaaaccaagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattca |
239 |
Q |
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||||||| |||||||||| |||| |||||||||| ||| ||||||||||||| |||||| || | |||||| ||| |||||||||||||||||||| |
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| T |
18229862 |
aacagattgtgaccaaacaaagcaggagcttaaccataaggcttcaaaacaaaggagggaatattagtcaaataaatcaaggggcaattaccattca |
18229958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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