View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_high_18 (Length: 291)

Name: NF0683_high_18
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_high_18
NF0683_high_18
[»] chr4 (3 HSPs)
chr4 (109-291)||(46890786-46890968)
chr4 (1-34)||(46890678-46890711)
chr4 (1-34)||(46873266-46873299)
[»] scaffold0055 (8 HSPs)
scaffold0055 (154-191)||(10677-10714)
scaffold0055 (154-191)||(18210-18247)
scaffold0055 (154-191)||(20439-20476)
scaffold0055 (154-191)||(23678-23715)
scaffold0055 (154-191)||(44760-44797)
scaffold0055 (154-191)||(57485-57522)
scaffold0055 (154-191)||(76176-76213)
scaffold0055 (154-187)||(29522-29555)
[»] scaffold0052 (7 HSPs)
scaffold0052 (154-191)||(8667-8704)
scaffold0052 (154-191)||(20682-20719)
scaffold0052 (154-191)||(40109-40146)
scaffold0052 (154-191)||(43079-43116)
scaffold0052 (154-191)||(55089-55126)
scaffold0052 (154-191)||(73821-73858)
scaffold0052 (154-187)||(66510-66543)
[»] scaffold0515 (1 HSPs)
scaffold0515 (145-189)||(10354-10398)
[»] scaffold0152 (3 HSPs)
scaffold0152 (145-189)||(17921-17965)
scaffold0152 (145-189)||(27974-28018)
scaffold0152 (145-189)||(36750-36794)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 109 - 291
Target Start/End: Original strand, 46890786 - 46890968
Alignment:
Q  109 tagatgttgttcagaatgtcattttctgtgatataatgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgcaactcggcttcaaattagag 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46890786 tagatgttgttcagaatgtcattttctgtgatataatgtgcaaatggaagaacgtgcgttgagttttgtggggaagtcgcaactcggcttcaaattagag 46890885  T
Q  209 tgtttgattaatggtttatgtgtgtcattttgttgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890886 tgtttgattaatggtttatgtgtgtcattttgttgtttgtattgtgcatgatgtttcatgtttggtttgacataaacttgctc 46890968  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46890678 - 46890711
Alignment:
Q  1 tgaagaaggtaacaataactcattttgcttattg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  46890678 tgaagaaggtaacaataactcattttgcttattg 46890711  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46873266 - 46873299
Alignment:
Q  1 tgaagaaggtaacaataactcattttgcttattg 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  46873266 tgaagaaggtaacaataactcattttgattattg 46873299  T

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Target: scaffold0055 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 10677 - 10714
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  10677 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 10714  T

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Target: scaffold0055; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 18210 - 18247
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18210 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 18247  T

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Target: scaffold0055; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 20476 - 20439
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20476 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 20439  T

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Target: scaffold0055; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 23715 - 23678
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  23715 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 23678  T

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Target: scaffold0055; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 44797 - 44760
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44797 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 44760  T

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Target: scaffold0055; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 57522 - 57485
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  57522 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 57485  T

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Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 76213 - 76176
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  76213 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 76176  T

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Target: scaffold0055; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 29522 - 29555
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcg 187  Q
    ||||||||||||||||| ||||||||||||||||    
T  29522 ggaagaacgtgcgttgagttttgtggggaagtcg 29555  T

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Target: scaffold0052 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 8704 - 8667
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8704 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 8667  T

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Target: scaffold0052; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 20719 - 20682
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20719 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 20682  T

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Target: scaffold0052; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 40109 - 40146
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  40109 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 40146  T

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Target: scaffold0052; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 43116 - 43079
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  43116 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 43079  T

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Target: scaffold0052; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 55126 - 55089
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  55126 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 55089  T

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Target: scaffold0052; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 73858 - 73821
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcgcaac 191  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  73858 ggaagaacgtgcgttgagttttgtggggaagtcgcaac 73821  T

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Target: scaffold0052; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 66543 - 66510
Alignment:
Q  154 ggaagaacgtgcgttgatttttgtggggaagtcg 187  Q
    ||||||||||||||||| ||||||||||||||||    
T  66543 ggaagaacgtgcgttgagttttgtggggaagtcg 66510  T

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Target: scaffold0515 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 10354 - 10398
Alignment:
Q  145 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 189  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  10354 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 10398  T

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Target: scaffold0152 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 17921 - 17965
Alignment:
Q  145 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 189  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  17921 tgtggaaatggaagaacgtgggttgagttttgtggggaagtcgca 17965  T

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Target: scaffold0152; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 27974 - 28018
Alignment:
Q  145 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 189  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  27974 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 28018  T

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Target: scaffold0152; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 36750 - 36794
Alignment:
Q  145 tgtgcaaatggaagaacgtgcgttgatttttgtggggaagtcgca 189  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||    
T  36750 tgtgaaaatggaagaacgtgggttgagttttgtggggaagtcgca 36794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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