View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_high_20 (Length: 251)
Name: NF0683_high_20
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4900303 - 4900062
Alignment:
| Q |
1 |
agggaaattagttgtgagttctaaaatataaataaccaaa--cttttaaagtgcataaaatatagaagcttaccacagttgccttgatccttcacaccag |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900303 |
agggaaattagttgtgagttctaaaatataaataaccaaaaacttttaaagtgcataaaatatagaagcttaccacagttgccttgatccttcacaccag |
4900204 |
T |
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| Q |
99 |
tcacaactcctttctttctccaatctaaagagtaaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctcttgctaattggcttctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900203 |
tcacaactcctttctttctccaatctaaagagtaaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctcttgctaattggcttctt |
4900104 |
T |
|
| Q |
199 |
caccttcgaaataaacttattcttgaactcctcattgttcat |
240 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |||| |
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| T |
4900103 |
caccttcgaaataaacttattcttgaactcttcattgctcat |
4900062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4947701 - 4947456
Alignment:
| Q |
1 |
agggaaattagttgtgagttctaaaatataaataaccaaa--cttttaaagtgcataaaata-tagaagcttaccacagttgccttgatccttcacacca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4947701 |
agggaaattagttgtgagttctaaaatataaataaccaaaaacttttaaagtgcataaaataatagaagcttaccacagttgccttgatccttcacacca |
4947602 |
T |
|
| Q |
98 |
gtcacaactcctttctttctccaatctaaagagtaaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctc--ttgctaattggctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4947601 |
gtcacaactcctttctttctccaatctaaagagtaaggtgcatcatcacaggattcaaccttgacatgcaagttactggccctcctttgctaattggctt |
4947502 |
T |
|
| Q |
196 |
c-ttcaccttcgaaataaacttattcttgaactcctcattgttcat |
240 |
Q |
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| |||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
4947501 |
cgttcaccttcgaaataaacttattcttgaactcttcattgctcat |
4947456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 34312492 - 34312548
Alignment:
| Q |
67 |
cttaccacagttgccttgatccttcacaccagtcacaactcctttctttctccaatc |
123 |
Q |
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||||||||| | |||||||||||| ||| |||| ||| | ||||||||||||||||| |
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| T |
34312492 |
cttaccacattggccttgatccttgacatcagtgacagcacctttctttctccaatc |
34312548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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