View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0683_high_4 (Length: 558)
Name: NF0683_high_4
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 277 - 466
Target Start/End: Complemental strand, 43906902 - 43906713
Alignment:
| Q |
277 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906902 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
43906803 |
T |
|
| Q |
377 |
caaattaatgaggatgttaattgctatgttgaggtgaaaatgaaaaataggctgaaaataagaatgaacgttaaccttatataatatgtg |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906802 |
caaattaatgaggatgttaattgctatgtaaaggtgaaaatgaaaaataggctgaaaataagaatgaacgttaaccttatataatatgtg |
43906713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 43907162 - 43906972
Alignment:
| Q |
16 |
attaattaagaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcgttgtattcaagagaattcttgagaagatcaacaagatctttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43907162 |
attaattaagaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcattgtattcaagagaattcttgagaagatcaacaagatctttc |
43907063 |
T |
|
| Q |
116 |
gtaagaaatttttgcactgcgtttcgcttcttccttattgtttctaatcttgtcttaatcaacttcaagcaatttttgctgttaattttcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43907062 |
ttaagaaatttttgcactgcgtttcgcttcttccttattgtttctaatcttgtctttatcaacttcaagcaatttttgctgttaattttcc |
43906972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1227 times since January 2019
Visitors: 4365