View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0683_high_5 (Length: 547)
Name: NF0683_high_5
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 19264524 - 19264098
Alignment:
| Q |
11 |
acaatatcctagagcaaccactatataaaaaaggtttagcttctaagctaagggatcccatttgaccacacacacttaactctatgcaaccatcccttct |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19264524 |
acaaaatcctagagcaaccactatataaaaaaggtttagcttctaagttaagggatcacatttgaccacacacacttaactctatgcaaccaacccttct |
19264425 |
T |
|
| Q |
111 |
taggggccaaaccctagactcattttctaaacaagagtgttggtgttcattgcatggtatggtaaaacccaccaacgacctagatccattaaccaacatc |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19264424 |
taggggccaaaccctatactcattttctaaacaagagtgttggtgttcattgcatggtatggtaaaacccaccaacgacctagatccattaaccaacatc |
19264325 |
T |
|
| Q |
211 |
atcacccatttgaaatggcaccatctttgcgcaatgggaacatcacgaaagacatcaacgagggagcttataacattatgctagagtgacttctagcggt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |
|
|
| T |
19264324 |
atcacccatttgaaatggcaccatctttgcgcagtgggaacatcacgaaagacatcaacgagggagcttctaacattatgctagagtaacttctagcgat |
19264225 |
T |
|
| Q |
311 |
ggtgaaggagctccatgaacgagacatggaaaaccaatccaagttagaaaagtaagaacaaataagagaggaagttgaggcgaaaacggaggaattacgc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19264224 |
ggtgaaggagctccatgaacgagacatggaaaaccaatccaagttagaaaagtaagaacaaataagagaggaagttgaggcgagaacggaggaattacgc |
19264125 |
T |
|
| Q |
411 |
caccaaatagaagaccaagaagcaaag |
437 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19264124 |
caccaaatagaagaccaagaagcaaag |
19264098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 434 - 541
Target Start/End: Original strand, 29980184 - 29980285
Alignment:
| Q |
434 |
aaagggtcaaagaaaagaggtttgtgtttgtgtttgggtttggtttgactcagtagcaacagatgaagaagaaagaaagtgagacttgggtgagtggtgt |
533 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29980184 |
aaagggtcaaagaaaagaggttt------gtgtttgggtttggtttgactcagtagcaacagatgaagaagaaagaaagtgagacttgggtgagtggtgt |
29980277 |
T |
|
| Q |
534 |
ggtcttgg |
541 |
Q |
| |
|
|||||||| |
|
|
| T |
29980278 |
ggtcttgg |
29980285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1142 times since January 2019
Visitors: 4365