View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0683_high_8 (Length: 463)
Name: NF0683_high_8
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 78798 - 79076
Alignment:
| Q |
1 |
tcatagagtttgatgttgaacatgtgagctaattatacgacgtggcctcaacttgcataattcgtgtattcttttcattattgagttgattatgatagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
78798 |
tcatagagtttgatgttgaacatgtgagctaattataggacgtgacctcaccttgcataattcgtgtattcttttcattattgcgttgattatgatagca |
78897 |
T |
|
| Q |
101 |
gtgtgtcctttagggatgatctttttgagcttannnnnnnncttcttatctc-ttctactgattttgaacaatctgtttttgccttatgttttggcacct |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
78898 |
gtgtgtcctttagggatgatctttttgagcttattttttt--ttcttatctctttctcctgattttgaacaatctgtttttgccttatgttttggaacat |
78995 |
T |
|
| Q |
200 |
tttatttagatccttgcctgtcaaggttttgtggatgtaatggatgttttgaggtgtaatggatcatctgttgctatctat |
280 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
78996 |
tttatttagatccttgcttgtcaaggttttgtggatgtaatggatgttttgaggtgtaatagatcgtctgttgctatctat |
79076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 281 - 435
Target Start/End: Original strand, 79172 - 79326
Alignment:
| Q |
281 |
aagttgaaaggactcggactcttttggaaatttagaaaaacatacttgcggcatagtaaaatgttatagttctgctttggtgataatattcttttttgga |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79172 |
aagttgaaaggactcggactcttttggaaatttagaaaaacatacttgcggcatagtaaaatgttatagttctgctttggtgataatattcttttttgga |
79271 |
T |
|
| Q |
381 |
gggttgatgcaaatgttttggcaagttcaaaattgaagaatacacttatattgtt |
435 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
79272 |
gggttattgcaaatgttttggcaagttcaaagttgaagaatacacttatattgtt |
79326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 281 - 432
Target Start/End: Original strand, 2442330 - 2442485
Alignment:
| Q |
281 |
aagttgaaaggactcggactcttttggaaatttagaaaaacatac----ttgcggcatagtaaaatgttatagttctgctttggtgataatattcttttt |
376 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||||||||||| |||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2442330 |
aagttgaaagggctcagacccttatggaaatttagaaaaatataccctattgtggcatactaaaatgttatggttctgctttggtgataatattcttttt |
2442429 |
T |
|
| Q |
377 |
tggagggttgatgcaaatgttttggcaagttcaaaattgaagaatacacttatatt |
432 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
2442430 |
tggaggattaatgcaaatgttttggcaagttgaaagttgaagaatacacttatatt |
2442485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 2440904 - 2440997
Alignment:
| Q |
187 |
tgttttggcaccttttatttagatccttgcctgtcaaggttttgtggatgtaatggatgttttgaggtgtaatggatcatctgttgctatctat |
280 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2440904 |
tgttttggcatcttttatttagatccttgcctgtcaatgttttgtggatgtattggatgttttgtggtgtaatggatcatttgttgctatctat |
2440997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 281 - 432
Target Start/End: Complemental strand, 6308226 - 6308071
Alignment:
| Q |
281 |
aagttgaaaggactcggactcttttggaaatttagaaaaacatac----ttgcggcatagtaaaatgttatagttctgctttggtgataatattcttttt |
376 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||| |||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6308226 |
aagttgaaagggctcagactcttctggaaatttagaaaaatataccctattgtggcatactaaaatgttatggttctgctttggtgataatattcttttt |
6308127 |
T |
|
| Q |
377 |
tggagggttgatgcaaatgttttggcaagttcaaaattgaagaatacacttatatt |
432 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6308126 |
tggaggattaatgcaaatgttttggcaagttgaaagttgaagaatacacttatatt |
6308071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 281 - 432
Target Start/End: Complemental strand, 6301416 - 6301261
Alignment:
| Q |
281 |
aagttgaaaggactcggactcttttggaaatttagaaaaacatac----ttgcggcatagtaaaatgttatagttctgctttggtgataatattcttttt |
376 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||||||||| |||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6301416 |
aagttgaaagggctcagactcttctggaaatttagaaaaatataccctattgtggcatactaaaatgttatggttctgctttggtgataatattcttttt |
6301317 |
T |
|
| Q |
377 |
tggagggttgatgcaaatgttttggcaagttcaaaattgaagaatacacttatatt |
432 |
Q |
| |
|
|||||| || ||||||||||||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
6301316 |
tggaggattaatgcaaatgttttggcaagttgaaagttgaagaatgcacttatatt |
6301261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 6301611 - 6301515
Alignment:
| Q |
184 |
ttatgttttggcaccttttatttagatccttgcctgtcaaggttttgtggatgtaatggatgttttgaggtgtaatggatcatctgttgctatctat |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
6301611 |
ttatgttttggcatcttttatttagatccttgtctgtcaaggttttgtggatgtattggatgttttgtggtgtaatggatcatttgttgctatctat |
6301515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 6308421 - 6308325
Alignment:
| Q |
184 |
ttatgttttggcaccttttatttagatccttgcctgtcaaggttttgtggatgtaatggatgttttgaggtgtaatggatcatctgttgctatctat |
280 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
6308421 |
ttatgttttggcatcttttatttagatccttgtctgtcaaggttttgtggatgtattggatgttttgtggtgtaatggatcatttgttgctatctat |
6308325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 870 times since January 2019
Visitors: 4356