View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_high_9 (Length: 458)
Name: NF0683_high_9
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 177 - 448
Target Start/End: Complemental strand, 21708972 - 21708701
Alignment:
| Q |
177 |
caaacaacattttgaggacatgaagtttgaacatatatgagagaccagtgtgagtgtcgtcgtgacttgtggcttttggaatgaattcaaaagaaacttt |
276 |
Q |
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| T |
21708972 |
caaacaacattttgaggacatgaagtttgaacatatatgagagaccagtgtgagtgtcgtcgtgacttgtggcttttggaatgaattcaaaagaaacttt |
21708873 |
T |
|
| Q |
277 |
gatgattgaaaatgtagaatccgaggtatttagtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgttggaataaagttgg |
376 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21708872 |
gatgattgaaaatgtagaattcgaggtatttagtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgtttgaataaagttgg |
21708773 |
T |
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| Q |
377 |
aaatttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctattgatctctattctgtg |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21708772 |
aaatttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctattgatctctattctgtg |
21708701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 432
Target Start/End: Complemental strand, 21710226 - 21710072
Alignment:
| Q |
282 |
ttgaaaatgtagaatccgaggtattt--agtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgttggaat-aaagttggaa |
378 |
Q |
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||||||||||||||| |||||| ||| | ||||||| | |||||||| |||||| |||| ||| ||||||||| |||| ||| | ||| |||||||||| |
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| T |
21710226 |
ttgaaaatgtagaattcgaggtgttttcaatgtctcataatagttcatgaaagttgaagagagttaatcaatttagtaaatgtcgtaattaaagttggaa |
21710127 |
T |
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| Q |
379 |
at-ttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctat |
432 |
Q |
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|| ||||||||||||| ||||| || |||| |||||||||||||||||||||||| |
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| T |
21710126 |
atattgaattgacaaaatgtttaaggcataaatagttgagaatgcaaatttctat |
21710072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 46630832 - 46630911
Alignment:
| Q |
7 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactact |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46630832 |
ggaagaaggacaaagaaaaagagaaggaaaaatgtaacacaaaccagaatttttcaaatggaacagaaaatccaactact |
46630911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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