View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_low_10 (Length: 501)

Name: NF0683_low_10
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_low_10
NF0683_low_10
[»] chr3 (3 HSPs)
chr3 (30-473)||(39030340-39030783)
chr3 (68-468)||(37862805-37863205)
chr3 (38-473)||(37858774-37859209)
[»] chr5 (5 HSPs)
chr5 (68-471)||(1478306-1478709)
chr5 (353-471)||(1482785-1482903)
chr5 (347-415)||(1487256-1487324)
chr5 (324-414)||(1509686-1509776)
chr5 (347-411)||(1492754-1492818)
[»] chr8 (2 HSPs)
chr8 (64-235)||(35251114-35251292)
chr8 (362-456)||(35251412-35251506)
[»] chr7 (3 HSPs)
chr7 (110-231)||(5310746-5310867)
chr7 (114-231)||(5289349-5289466)
chr7 (65-231)||(5302800-5302966)
[»] chr1 (3 HSPs)
chr1 (353-414)||(44129166-44129227)
chr1 (353-414)||(44133371-44133432)
chr1 (353-414)||(44141793-44141854)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 473
Target Start/End: Original strand, 39030340 - 39030783
Alignment:
Q  30 tgttgatggtttgttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgc 129  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030340 tgttgatggttagttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgc 39030439  T
Q  130 ggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaagga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030440 ggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaagga 39030539  T
Q  230 gctattaaagctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaaaactcttgttgagg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030540 gctattaaagctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaaaactcttgttgagg 39030639  T
Q  330 cctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggctt 429  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030640 cctttcaacctttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggctt 39030739  T
Q  430 aaagccagagaaaatgcaagccactcggcatgtacttagtgagt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39030740 aaagccagagaaaatgcaagccactcggcatgtacttagtgagt 39030783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 68 - 468
Target Start/End: Complemental strand, 37863205 - 37862805
Alignment:
Q  68 cgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaag 167  Q
    |||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  37863205 cgtggacctagtgatactcatcttgatagtcttgtggggcaggcattgtttggagatggtgcagcagctgtgattgttggttcagatccgttgccagaag 37863106  T
Q  168 ttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagctattaaagctcacactagagaagcaggactaacatt 267  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| | | ||||  | ||||||||||||| |||||    
T  37863105 ttgagaagcctttgtttgaattggtttggactgcacaaacaatcgttccagatagtgaaggagctattgatggtcaccttcgagaagcaggactgacatt 37863006  T
Q  268 acatatcatcaaagatgttcctgacctcatctcaaagaacattgagaaaactcttgttgaggcctttcaaactttgaatatctccgattacaattcaatt 367  Q
     ||| || |||| |||||||||| |||  |||||||||||||||||||| ||||||||||||| |||||  ||||||||||||| ||||||||||| ||     
T  37863005 ccatctcctcaaggatgttcctggccttgtctcaaagaacattgagaaagctcttgttgaggcatttcagcctttgaatatctcggattacaattccatc 37862906  T
Q  368 ttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtactta 467  Q
    |||||||| || |||||||| |||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37862905 ttttggatcgcgcacccaggtggaccagcaattcttgaccaagttgaactcaaattaggcttaaagccagagaaaatgcaagccactcgacatgtactta 37862806  T
Q  468 g 468  Q
    |    
T  37862805 g 37862805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 38 - 473
Target Start/End: Complemental strand, 37859209 - 37858774
Alignment:
Q  38 gtttgttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagctg 137  Q
    |||||||||||||| |  | | ||| ||| |||||||| ||||| ||| |||||||||| ||| |||| |  |||||||||||||||||||| |||||||    
T  37859209 gtttgttcagagataactgcagttactttccgtggacccagtgacactcatcttgatagccttgtggggcaagcattgtttggagatggtgcagcagctg 37859110  T
Q  138 tgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagctattaa 237  Q
    |||| || ||||||||||| || ||| |||||||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |    
T  37859109 tgatcgtaggttcagacccattaccacaagttgagaaacccttgtttgaattggtatggactgcacaaacgatccttccagatagtgaaggagcaattga 37859010  T
Q  238 agctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaaaactcttgttgaggcctttcaa 337  Q
     | ||||  | | ||||  || || ||||| ||| || |||| ||||||||||  || ||||||||||||||||||||| |||||| |||||||||||||    
T  37859009 cggtcaccttcgtgaagtcgggcttacattccatctcctcaaggatgttcctggtcttatctcaaagaacattgagaaagctcttgctgaggcctttcaa 37858910  T
Q  338 actttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccag 437  Q
     ||||   |||||| ||||||||||| || |||||||| |||||||| || |||| ||||||||| |||||||| |||||||||||| ||||||||||||    
T  37858909 cctttaggtatctctgattacaattccatcttttggatcgcacaccctggtggaccagcaattctggaccaagtggaagccaaattaagcttaaagccag 37858810  T
Q  438 agaaaatgcaagccactcggcatgtacttagtgagt 473  Q
    ||||||||||||||||||| ||||| ||||| ||||    
T  37858809 agaaaatgcaagccactcgacatgtgcttagcgagt 37858774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 68 - 471
Target Start/End: Original strand, 1478306 - 1478709
Alignment:
Q  68 cgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaag 167  Q
    ||||| |||||||||||| || | || |||||| | ||||  ||| | |||||||||||||| || ||  | ||||||||||| |||||  | ||||||     
T  1478306 cgtggtcctagtgatactcatttggacagtcttgttggacaagcactatttggagatggtgctgctgcactcattgttggttctgacccaataccagaaa 1478405  T
Q  168 ttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagctattaaagctcacactagagaagcaggactaacatt 267  Q
    ||||||| ||| | |||||  |||| |||||||||||||| ||   |||||| ||||| ||||| ||| | | ||||  | | ||||| || ||||||||    
T  1478406 ttgagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgagggagccattgatggtcaccttcgtgaagctggtctaacatt 1478505  T
Q  268 acatatcatcaaagatgttcctgacctcatctcaaagaacattgagaaaactcttgttgaggcctttcaaactttgaatatctccgattacaattcaatt 367  Q
     ||  |  | |||||||||||||   |  | |||||||||||||| ||| |  | || ||||| || ||| | || || ||||| ||||| ||||||||     
T  1478506 tcaccttcttaaagatgttcctgggattgtttcaaagaacattgataaagcattggtcgaggctttccaaccattaaacatctctgattataattcaatc 1478605  T
Q  368 ttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtactta 467  Q
    || |||||||| |||||||| ||||  |||||||| |||||||||||||  || ||||||||||| || || |||||| | |||||| || | |||||||    
T  1478606 ttctggattgctcacccaggtggacccgcaattctagaccaagttgaagaaaagttaggcttaaaacctgaaaaaatgaaggccactagggaagtactta 1478705  T
Q  468 gtga 471  Q
    ||||    
T  1478706 gtga 1478709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 471
Target Start/End: Original strand, 1482785 - 1482903
Alignment:
Q  353 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagcca 452  Q
    |||||||| ||||| ||||||||||| || ||||| ||||  ||||||||||| |||||||||   || ||||||||||| || || || ||| ||||||    
T  1482785 gattacaactcaatcttttggattgctcatccaggtggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaacctgaaaagatgaaagcca 1482884  T
Q  453 ctcggcatgtacttagtga 471  Q
    || |  | |||||||||||    
T  1482885 ctagagaagtacttagtga 1482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 1487256 - 1487324
Alignment:
Q  347 atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa 415  Q
    ||||| ||||||||| |||||||||||||||  |||||||||||||  |||||| | ||||| ||||||    
T  1487256 atctctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaa 1487324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 414
Target Start/End: Original strand, 1509686 - 1509776
Alignment:
Q  324 ttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 414  Q
    ||||||| |||||| | || || ||||| |||||||| ||||| ||||||||||| |||||||  |||   |||||| |||||||||||||    
T  1509686 ttgaggcatttcaaccattaaacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttga 1509776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 1492754 - 1492818
Alignment:
Q  347 atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagt 411  Q
    ||||| |||||||| ||||| ||||||||||||||||| || ||||  |||||| | ||||||||    
T  1492754 atctctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagt 1492818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 35251114 - 35251292
Alignment:
Q  64 ttttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagc-------tgtgattgttggttcagaccc 156  Q
    ||||||||| |||||||| ||  |||||||||||||  ||||||  ||||||||||||||||| || |||||       |||||| ||||||||||| ||    
T  35251114 ttttcgtggccctagtgacacccatcttgatagtctcgtgggacaagcattgtttggagatggcgctgcagcctgcagctgtgatcgttggttcagatcc 35251213  T
Q  157 gttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagctatt 235  Q
     || || || |||||||  |||||||||||  | |  |||||||||||||| ||| |||| |||||| |||||||||||    
T  35251214 attacctgaggttgagagacctttgtttgagctagagtggactgcacaaacaatccttcctgatagtcaaggagctatt 35251292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 456
Target Start/End: Original strand, 35251412 - 35251506
Alignment:
Q  362 tcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagccactcg 456  Q
    ||||| ||||||||||| ||| | || |||| ||| ||||||||||||||||| | ||| |||||||| ||||| || ||| || ||||||||||    
T  35251412 tcaatcttttggattgctcacacgggtggaccagcgattcttgaccaagttgaggacaagttaggcttgaagcctgaaaaattggaagccactcg 35251506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 231
Target Start/End: Original strand, 5310746 - 5310867
Alignment:
Q  110 gcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaacca 209  Q
    ||||||||||||||||| || || ||| | ||||||||||| |||||  | |||||| ||||||| ||| | |||||  |||| |||||||||||||| |    
T  5310746 gcattgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaa 5310845  T
Q  210 tcattccagatagtgaaggagc 231  Q
    |   ||| ||||||||||||||    
T  5310846 ttgctcctgatagtgaaggagc 5310867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 5289466 - 5289349
Alignment:
Q  114 tgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcat 213  Q
    ||||||||||||| || || ||| | ||||||||||| |||||  | |||||| ||||||| ||| | |||||  |||| |||||||||||||| ||       
T  5289466 tgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgc 5289367  T
Q  214 tccagatagtgaaggagc 231  Q
    ||| ||||||||||||||    
T  5289366 tccggatagtgaaggagc 5289349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 231
Target Start/End: Original strand, 5302800 - 5302966
Alignment:
Q  65 tttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccag 164  Q
    |||||||| |||||||||||| |  | || |||||| | ||||  ||| | ||||||||||| || || ||| | |||||||| || |||||  | ||||    
T  5302800 tttcgtggccctagtgatactcacttggacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgaccccgtaccag 5302899  T
Q  165 aagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagc 231  Q
    || ||||||| ||| | |||||  |||| |||||||||||||| ||   ||| ||||||||||||||    
T  5302900 aaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagc 5302966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 44129166 - 44129227
Alignment:
Q  353 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 414  Q
    |||||||||||||| ||||||||||||||||| || ||||  |||||||| || ||||||||    
T  44129166 gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga 44129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 44133371 - 44133432
Alignment:
Q  353 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 414  Q
    |||||||||||||| ||||||||||||||||| || ||||  |||||||| || ||||||||    
T  44133371 gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga 44133432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 44141793 - 44141854
Alignment:
Q  353 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 414  Q
    |||||||||||||| ||||||||||||||||| || ||||  |||||||| || ||||||||    
T  44141793 gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga 44141854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 259 times since January 2019
Visitors: 4374