View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_11 (Length: 476)
Name: NF0683_low_11
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 30805530 - 30805097
Alignment:
| Q |
15 |
tatcatcatgcaaatggcttaaaacaatcacaaaccacattcaaatctatacaactacgcagctagcaaaagaaccagattagaaatgaacccaaaagta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805530 |
tatcatcatgcaaatggcttaaaacaatcacaaaccacattcaaatctatacaaatacgcagctagcaaaagaaccagattagaaatgaacccaaaagta |
30805431 |
T |
|
| Q |
115 |
ataacattatcataccaattccacagaacagcatgcattgcagttctatccttagcagcatccttttctgcaaaaagcgccactaccctttcatcagaca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805430 |
ataacattatcataccaattccacagaacagcatgcattgcagttctatccttagcagcatccttttctgcaaaaagcgccactaccctttcatcagaca |
30805331 |
T |
|
| Q |
215 |
caagctcagcaaccactttagccctcactttactcccttctccactgcctccgagcaccctactcgccaccctcaccgcggcaccagcactaacatgaca |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805330 |
caagctcagcaaccactttagccctcactttactcccttctccactgcctccgagcaccctactcgccaccctcaccgcggcaccagcactaacatgaca |
30805231 |
T |
|
| Q |
315 |
cctacctaacagccctaaaaacacccctttcgccgtctccgccccagcggtccctgctgccgtaaaataagcctccacagcagacacccaaacaccttct |
414 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805230 |
cctacctaacagccctaaaaacacccctttcgccgtctccgccccagcggtccctgctgccgtaaaataagcctccacagcagacacccaaacaccttct |
30805131 |
T |
|
| Q |
415 |
ggaatccctctatcaatcaccattcccctcaatt |
448 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30805130 |
ggaatccctctatcaatcaccattcccctcaatt |
30805097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 30806966 - 30806812
Alignment:
| Q |
15 |
tatcatcatgcaaatggcttaaaacaatcacaaaccacattcaaatctatacaactacgcagctagcaaaagaaccagattagaaatgaacccaaaagta |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||| || |||| |
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| T |
30806966 |
tatcatcatgcaaatggcgcaaaacaatcacaaaccacattcgaatttatacaacaacgcagctagcagaagaaccagattagaaatgaaccaaagagta |
30806867 |
T |
|
| Q |
115 |
ataacattatcataccaattccacagaacagcatgcattgcagttctatccttag |
169 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
30806866 |
ataacattatcataccaattccaaagaacagcatgcattgctgttctatccttag |
30806812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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