View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_15 (Length: 435)
Name: NF0683_low_15
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 42804906 - 42805231
Alignment:
| Q |
1 |
agaacatgagaggatccattctcattgaagttaagttatgctttcatctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggtt |
100 |
Q |
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| T |
42804906 |
agaacatgagaggatctattctcattgaagttaagttatgctttcttctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggtt |
42805005 |
T |
|
| Q |
101 |
gaacctatcctgccttcataagatgccctgtcatgaatagcactatttattcacaacgcatatgtttataatttttcagtatttcttggaccacaggata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42805006 |
gaacctatcctgccttcataagatgccctgtcatgaatagcactatttattcacaacgcatttgtttataatttttcagtatttcttggaccacaggata |
42805105 |
T |
|
| Q |
201 |
ttaagagctttttgcaatttacattgaaaatgttgtgtatgtcaaccgccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaa |
300 |
Q |
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| T |
42805106 |
tcaagagctttttgcaatttacattgaaaatgttgtgtatgtcaaccaccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaa |
42805205 |
T |
|
| Q |
301 |
tacatctactagaagtttgatgatgt |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
42805206 |
tacatctactagaagtttgatgatgt |
42805231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 42762508 - 42762821
Alignment:
| Q |
5 |
catgagaggatccattctcattgaagttaagttatgctttcatctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaac |
104 |
Q |
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||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42762508 |
catgagaggatccattctcattgaagtgaatttatgctttcttctatgttactttggattgaagttttaatttcatttatgtcgtttttaggggttgaac |
42762607 |
T |
|
| Q |
105 |
ctatcctgccttcataagatgccctgtcatgaatagcactatttattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaa |
204 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42762608 |
ctatcccgccttcataagatgccctgtcatgaatagcactatttattcacaacgtatttgtttataatttttcagtatttcttggaccacaggatattaa |
42762707 |
T |
|
| Q |
205 |
gagctttttgcaatttacattgaaaatgttgtgtatgtcaaccgccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaataca |
304 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
42762708 |
gagctttttgcaatttacaatgaaaatgctgtgtatgtcaactgccaaggatttgtgttgatgcccttaccattta--------ttatatttttaataca |
42762799 |
T |
|
| Q |
305 |
tctactagaagtttgatgatgt |
326 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
42762800 |
tctactagaagtttgatgatgt |
42762821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 33048852 - 33048988
Alignment:
| Q |
3 |
aacatgagaggatccattctcattgaagttaagttatgctttcatctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttga |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048852 |
aacatgagaggatccattctcattgaagttaagttatgctttcttctatgttacttaggattgaggttttaatttcatttatgtcgtttttaggggttga |
33048951 |
T |
|
| Q |
103 |
acctatcctgccttcataagatgccctgtcatgaata |
139 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33048952 |
acctatcctgccttcataagatgccctgtcatgaata |
33048988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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