View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_17 (Length: 409)
Name: NF0683_low_17
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 75 - 409
Target Start/End: Complemental strand, 47075572 - 47075238
Alignment:
| Q |
75 |
gcatacagaattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagctta |
174 |
Q |
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| T |
47075572 |
gcatccagaattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagctta |
47075473 |
T |
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| Q |
175 |
actgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgcaaggagtgctgttg |
274 |
Q |
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| T |
47075472 |
actgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgcaaggagtgctgttg |
47075373 |
T |
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| Q |
275 |
agattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatatccgttttatttattaca |
374 |
Q |
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| T |
47075372 |
agattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaataccaagctccatcatatccgttttatttattaca |
47075273 |
T |
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| Q |
375 |
ttcttaaaactcatcttgctttttcttgtaggatc |
409 |
Q |
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| T |
47075272 |
ttcttaaaactcatcttgctttttcttgtaggatc |
47075238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 83 - 343
Target Start/End: Complemental strand, 47057921 - 47057666
Alignment:
| Q |
83 |
aattaagattatagactttgtgtgacattggtgtctctattgtttttgtgtgatgtggttaacagatagtgaccaaaccaagccggagcttaactgtaaa |
182 |
Q |
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| T |
47057921 |
aattaagattatggactttgtgtgacattagtgtctct---gtttgtgtgtgctatgg--aacagatagtgaccaaaccaagccgaagcttaaccttaaa |
47057827 |
T |
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| Q |
183 |
gcttcaaaacaaaagag-ggattagtggtcaaagaaaacaaggggcaattaccattcatgctgaggagactgttgctgcaaggagtgctgttgagattat |
281 |
Q |
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| T |
47057826 |
gcttcaaagctacaaagaggatca-tgttcgaagaaatcttggaattattaccattcttgctgaagagactgttgcttcaaggagtgctgttgagattat |
47057728 |
T |
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| Q |
282 |
cttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaatacc |
343 |
Q |
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| T |
47057727 |
cttccgttgttctcgcttggataacaaagacattttttctaaaagtgtacatattcaatacc |
47057666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 143 - 357
Target Start/End: Original strand, 18229862 - 18230076
Alignment:
| Q |
143 |
aacagatagtgaccaaaccaagccggagcttaactgtaaagcttcaaaacaaaagagggattagtggtcaaagaaaacaaggggcaattaccattcatgc |
242 |
Q |
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| T |
18229862 |
aacagattgtgaccaaacaaagcaggagcttaaccataaggcttcaaaacaaaggagggaatattagtcaaataaatcaaggggcaattaccattcacgc |
18229961 |
T |
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| Q |
243 |
tgaggagactgttgctgcaaggagtgctgttgagattatcttccgttgttctcacttggataacaaagacattttatctaaaagtgtaaatattcaatac |
342 |
Q |
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| T |
18229962 |
tgaggaaacagttgctgcaaagaatgctgttgatattatcttccgctgctctcacttggataacaaagacattttttctaaaagtgtacatattcaatac |
18230061 |
T |
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| Q |
343 |
caagctccatcatat |
357 |
Q |
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| T |
18230062 |
ctagcttcatcatat |
18230076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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