View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_low_21 (Length: 398)

Name: NF0683_low_21
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_low_21
NF0683_low_21
[»] chr4 (1 HSPs)
chr4 (68-275)||(7353154-7353363)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 68 - 275
Target Start/End: Original strand, 7353154 - 7353363
Alignment:
Q  68 cgaataatatggtagaaaaatcaaacaatacatgtttcttgacgtcaatgagtgtagaaatcttttagcagnnnnnnnncaatgatttcagactagtctt 167  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  7353154 cgaaaaatatggtagaaaaatcaaacaatacatgtttcttgacgtcaatgagtgtagaaatcttttagcagtcttttttcaatgatttcagactagtctt 7353253  T
Q  168 tctagcggtcgttcggggtattttgannnnnnn--ggctgccggagagtaatatcggaagcctaaagaatagttttcttgtcatgaaagcttggtctaca 265  Q
    ||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7353254 tctagcggtcgttcggggtattttgatttttttttggctgccggagagtaatatcggaagcctaaagaatagttttcttgtcatgaaagcttggtctaca 7353353  T
Q  266 tgaacaactc 275  Q
    ||||| ||||    
T  7353354 tgaacgactc 7353363  T

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