View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_22 (Length: 391)
Name: NF0683_low_22
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 353
Target Start/End: Complemental strand, 55397351 - 55397010
Alignment:
| Q |
15 |
tctctaaaaacgtggttgttgagttttaagcgccatcttc---attctggacgctatcctctttctcttctctccacttcatttcattggtctttcattt |
111 |
Q |
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| T |
55397351 |
tctctaaaaacgtggttgttcagttttaagcgccatcttcttcattctggacgttatcctctttctcttctctccacttcatttcattggtctttcattt |
55397252 |
T |
|
| Q |
112 |
ctatctatcaatcaatccaaatgcttcacactcatcttcatctcaacaatgtccaattcctctcatcacactcttctccgtctctattccccctcccttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55397251 |
ctatctatcaatcaatccaaatgcttcacactcatcttcatctcaacaatgtccaattcctctcatcacactcttctccgtctctattccccctcccttc |
55397152 |
T |
|
| Q |
212 |
ctcaaaattcagcaccgttccttttcccacaccaatcagaagaagaacctccttttctactctcagattccgtagtttcactcgcagactcagaaactcg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55397151 |
ctcaaaattcagcaccgttccttttcccacaccaatcagaagaagaacctccttttctactctcagattccgtagtttcactcgcagactcagaaactcg |
55397052 |
T |
|
| Q |
312 |
tcgacgaatgatgttaaactgaacgaaacggagcagaagaag |
353 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55397051 |
tcgacgaatgatgttcaactgaacgaaacggagcagaagaag |
55397010 |
T |
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