View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0683_low_23 (Length: 388)
Name: NF0683_low_23
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_23 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 127 - 339
Target Start/End: Original strand, 30049252 - 30049464
Alignment:
| Q |
127 |
tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
226 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049252 |
tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
30049351 |
T |
|
| Q |
227 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
326 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049352 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
30049451 |
T |
|
| Q |
327 |
gcacttcctagtg |
339 |
Q |
| |
|
||||||||||||| |
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|
| T |
30049452 |
gcacttcctagtg |
30049464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 127 - 339
Target Start/End: Original strand, 7162205 - 7162417
Alignment:
| Q |
127 |
tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
226 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
7162205 |
tgaatcatatacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaactgccaaaaatccaattcaacatggaagagcaaagcatat |
7162304 |
T |
|
| Q |
227 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
326 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7162305 |
caatgtcaaatttcatgctataagagaagctgaacagaatggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaaaaaag |
7162404 |
T |
|
| Q |
327 |
gcacttcctagtg |
339 |
Q |
| |
|
|||||| |||||| |
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| T |
7162405 |
gcacttgctagtg |
7162417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 127 - 339
Target Start/End: Complemental strand, 196763 - 196551
Alignment:
| Q |
127 |
tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
196763 |
tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
196664 |
T |
|
| Q |
227 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
196663 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
196564 |
T |
|
| Q |
327 |
gcacttcctagtg |
339 |
Q |
| |
|
||||||||||||| |
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|
| T |
196563 |
gcacttcctagtg |
196551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 127 - 339
Target Start/End: Original strand, 3945506 - 3945718
Alignment:
| Q |
127 |
tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3945506 |
tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
3945605 |
T |
|
| Q |
227 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945606 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
3945705 |
T |
|
| Q |
327 |
gcacttcctagtg |
339 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3945706 |
gcacttcctagtg |
3945718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 127 - 339
Target Start/End: Complemental strand, 39949924 - 39949712
Alignment:
| Q |
127 |
tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39949924 |
tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
39949825 |
T |
|
| Q |
227 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
326 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39949824 |
caatgtaaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
39949725 |
T |
|
| Q |
327 |
gcacttcctagtg |
339 |
Q |
| |
|
||||||||||||| |
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|
| T |
39949724 |
gcacttcctagtg |
39949712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 127 - 339
Target Start/End: Original strand, 22365134 - 22365346
Alignment:
| Q |
127 |
tgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365134 |
tgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatggaagaacaaagcatat |
22365233 |
T |
|
| Q |
227 |
caatgtcaaatttcatgctataagagaagctgaacaaaatggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365234 |
caatgtcaaatttcatgctataagagaagctgaacagaatggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaacaaaa |
22365333 |
T |
|
| Q |
327 |
gcacttcctagtg |
339 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22365334 |
gcacttcctagtg |
22365346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 22135200 - 22135264
Alignment:
| Q |
192 |
aaaaatccaattcaacatggaagaacaaagcatatcaatgtcaaatttcatgctataagagaagc |
256 |
Q |
| |
|
||||||||| |||| ||||| ||||| ||||| |||||||| ||||| ||||| ||||||||||| |
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|
| T |
22135200 |
aaaaatccagttcagcatggtagaactaagcacatcaatgtaaaattccatgccataagagaagc |
22135264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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