View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0683_low_25 (Length: 375)
Name: NF0683_low_25
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 29 - 369
Target Start/End: Complemental strand, 42750544 - 42750207
Alignment:
| Q |
29 |
agttgtttcactgatgaaactcgaatgctctcaattgactcaacaataactaaaactcattaaggatcttagttcaatgacataggatagtatttatcat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42750544 |
agttgtttcactgatgaaactcgaatgctctcaattgactcaacaataactaaaactcattaaggatcttagttcaatgacataggatagtatttatcat |
42750445 |
T |
|
| Q |
129 |
ttaaaagtttggccataatggaatcaacaacatacaccaataccatgagctgccatctaaggaggacttcattaaagcccctaagattcatgaaccctat |
228 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42750444 |
ttaaaaatttggccataatggaaccaaca---tacaccaataccatgagctgccatctaaggaggacttcattaaagcccctaagattcatgaaccctat |
42750348 |
T |
|
| Q |
229 |
tcccccgtcagattttggcttgcataagtgatccctcataatccaatgaactttaccctcaaagtctttactctcccaccaaaaagaacttaagatgttt |
328 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42750347 |
ttccccgtcagattttggcttgcataagtgatccctcataatccaatgaactttaccctcaaagtctttactctcccaccaaaaagaacttaagatgttt |
42750248 |
T |
|
| Q |
329 |
aatctacgaagtaagacatatgtaagtcttattcatctcac |
369 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
42750247 |
aatctacgaattaagacatatgtaagtcttattcatttcac |
42750207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 42759475 - 42759371
Alignment:
| Q |
208 |
cctaagattcatgaaccctattcccccgtcagattttggcttgcataagtgatccctcataatccaatgaactttaccctcaaagtctttactctcccac |
307 |
Q |
| |
|
|||||| ||||| ||||||||| |||| ||| |||| ||||||||||| |||| || ||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
42759475 |
cctaagtttcataaaccctatttccccatcatatttgggcttgcataaatgattccacataatccaataaactttagtctcaaagtctttactctcccac |
42759376 |
T |
|
| Q |
308 |
caaaa |
312 |
Q |
| |
|
||||| |
|
|
| T |
42759375 |
caaaa |
42759371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1163 times since January 2019
Visitors: 4365