View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_26 (Length: 361)
Name: NF0683_low_26
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 333
Target Start/End: Original strand, 4900435 - 4900740
Alignment:
| Q |
29 |
agcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatggtg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900435 |
agcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatggtg |
4900534 |
T |
|
| Q |
129 |
ggatagatacagaagctgattatccatacattggtgtggatggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgtatt |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4900535 |
ggatagatacagaagctgattatccatacattggtgtgggtggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgtatt |
4900634 |
T |
|
| Q |
229 |
ttgcattgtgaaagaacataacatatctgtatttaatttattatg-ttttttctttctttcttgaattaggaggaaaccaaatttgttaccattgatggc |
327 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4900635 |
ttgcattgtgaaagaacataacatatctgtgtttaatttattatgtttttttttttctttcttgaattaggaggaaaccaaagttgttaccattgatggc |
4900734 |
T |
|
| Q |
328 |
tacact |
333 |
Q |
| |
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|||||| |
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| T |
4900735 |
tacact |
4900740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 29 - 333
Target Start/End: Original strand, 4947832 - 4948138
Alignment:
| Q |
29 |
agcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatggtg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947832 |
agcctttcagaacaagaacttgtagattgtgatactactaatgatggatgtgaaggaggatacatggattatgcttttgagtgggttataaacaatggtg |
4947931 |
T |
|
| Q |
129 |
ggatagatacagaagctgattatccatacattggtgtggatggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgtatt |
228 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4947932 |
ggatagatacagaagctgattatccatacattggtgtgggtggtacttgcaatgtcaccaaggtctttctattaacccttccttttcctcactatgtatt |
4948031 |
T |
|
| Q |
229 |
ttgcattgtgaaagaacataacatatctgtatttaatttattat--gttttttctttctttcttgaattaggaggaaaccaaatttgttaccattgatgg |
326 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4948032 |
ttgcattgtgaaagaacataacatatctgtgtttaatttattattgtttttttttttctttcttgaattaggaggaaaccaaagttgttaccattgatgg |
4948131 |
T |
|
| Q |
327 |
ctacact |
333 |
Q |
| |
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||||||| |
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|
| T |
4948132 |
ctacact |
4948138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 5009794 - 5009911
Alignment:
| Q |
217 |
tcactatgtattttgcattgtgaaagaacataacatatctgtatttaatttattatg-ttttttctttctttcttgaattaggaggaaaccaaatttgtt |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
5009794 |
tcactatgtattttgcattgtgaaagaacataacatatctgtgtttaatttattatgtttttttttttctttcttgaattaggaggaaaccaaagttgtt |
5009893 |
T |
|
| Q |
316 |
accattgatggctacact |
333 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
5009894 |
accattgatggctacact |
5009911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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