View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_low_3 (Length: 574)

Name: NF0683_low_3
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_low_3
NF0683_low_3
[»] chr4 (10 HSPs)
chr4 (256-321)||(2183346-2183411)
chr4 (253-322)||(45413766-45413835)
chr4 (240-305)||(26635244-26635309)
chr4 (235-317)||(34666464-34666546)
chr4 (254-321)||(36625533-36625600)
chr4 (429-483)||(1012357-1012411)
chr4 (434-477)||(20097426-20097469)
chr4 (270-309)||(29539206-29539245)
chr4 (258-321)||(55945653-55945716)
chr4 (248-321)||(33235785-33235858)
[»] chr2 (11 HSPs)
chr2 (252-321)||(40626520-40626589)
chr2 (253-317)||(6457653-6457717)
chr2 (240-305)||(1529661-1529726)
chr2 (270-308)||(18665224-18665262)
chr2 (252-321)||(40054458-40054527)
chr2 (434-483)||(41643938-41643987)
chr2 (252-299)||(3044871-3044918)
chr2 (434-477)||(6177841-6177884)
chr2 (434-483)||(19073424-19073473)
chr2 (280-317)||(39111666-39111703)
chr2 (433-477)||(18059301-18059345)
[»] chr1 (9 HSPs)
chr1 (253-322)||(6768312-6768381)
chr1 (247-321)||(26793808-26793882)
chr1 (252-317)||(9383222-9383287)
chr1 (247-304)||(42471963-42472020)
chr1 (270-321)||(50004909-50004960)
chr1 (259-321)||(19806758-19806820)
chr1 (247-320)||(49236219-49236292)
chr1 (258-305)||(38332376-38332423)
chr1 (253-321)||(4076342-4076410)
[»] chr7 (7 HSPs)
chr7 (247-321)||(24429741-24429815)
chr7 (256-317)||(41482419-41482480)
chr7 (270-321)||(39644955-39645006)
chr7 (272-305)||(45980471-45980504)
chr7 (253-321)||(2333983-2334050)
chr7 (330-374)||(41482548-41482591)
chr7 (256-304)||(45884641-45884689)
[»] chr8 (8 HSPs)
chr8 (418-483)||(6267438-6267503)
chr8 (253-317)||(31734371-31734435)
chr8 (255-321)||(39283758-39283824)
chr8 (248-321)||(22573186-22573259)
chr8 (380-420)||(6267545-6267585)
chr8 (270-321)||(11066534-11066585)
chr8 (248-321)||(9028625-9028698)
chr8 (270-319)||(38503855-38503904)
[»] chr3 (9 HSPs)
chr3 (250-326)||(45850748-45850824)
chr3 (258-317)||(20524907-20524966)
chr3 (252-318)||(32490957-32491023)
chr3 (265-321)||(38457788-38457844)
chr3 (258-317)||(51976243-51976302)
chr3 (251-321)||(40416999-40417069)
chr3 (434-467)||(7568668-7568701)
chr3 (247-304)||(45818592-45818649)
chr3 (277-321)||(44764090-44764134)
[»] chr6 (5 HSPs)
chr6 (240-295)||(16342697-16342752)
chr6 (258-317)||(8547436-8547495)
chr6 (265-317)||(8573796-8573848)
chr6 (330-377)||(14228002-14228048)
chr6 (260-321)||(129102-129163)
[»] chr5 (7 HSPs)
chr5 (270-317)||(13109764-13109811)
chr5 (252-321)||(34731320-34731389)
chr5 (270-317)||(13039770-13039817)
chr5 (434-483)||(31878449-31878498)
chr5 (330-372)||(15416354-15416395)
chr5 (259-296)||(16290716-16290753)
chr5 (430-483)||(25653646-25653699)
[»] scaffold0200 (1 HSPs)
scaffold0200 (434-477)||(24756-24799)


Alignment Details
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 2183411 - 2183346
Alignment:
Q  256 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggat 2183346  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 45413766 - 45413835
Alignment:
Q  253 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggata 322  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  45413766 ttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggata 45413835  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 26635244 - 26635309
Alignment:
Q  240 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 305  Q
    |||||| |||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| |||||    
T  26635244 gcgcttgatagttttgtgctatcaggttgctaacccaccaaaaactaaggataagaataataaagg 26635309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 34666546 - 34666464
Alignment:
Q  235 aacaagcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| |||| ||| |||||||||||| |||| | | ||||||||    
T  34666546 aacacgcgcttgatagctttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggata 34666464  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 36625533 - 36625600
Alignment:
Q  254 tatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||||||| |||| ||||||| |||||| ||||||| | ||| |||||||||| ||||||||||||    
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggat 36625600  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 483
Target Start/End: Original strand, 1012357 - 1012411
Alignment:
Q  429 cgagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 483  Q
    |||||||||||||||||||  |||||||||||||||||| | ||||||| |||||    
T  1012357 cgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacat 1012411  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Complemental strand, 20097469 - 20097426
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 477  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||    
T  20097469 atttgtgtatttaattcatgccacgtcagattatatagtgtatt 20097426  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 29539245 - 29539206
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtgg 309  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  29539245 taacccaccaaaaattagggataaaaataacaaatggtgg 29539206  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Original strand, 55945653 - 55945716
Alignment:
Q  258 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||| |||||||||||||||||| |||| ||| ||||||| ||| || | ||||||||||||    
T  55945653 ctatcatgttgttaacccaccaaaagttaaagattaaaataagaaatggagaataggataggat 55945716  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 33235785 - 33235858
Alignment:
Q  248 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||||||| ||||||  ||| |||| || |||||||||||||||| ||| ||||||| |  ||||||||||||    
T  33235785 tagttttatcctatcatattgctaactcatcaaaaattaaggataataattacaaaggttcaataggataggat 33235858  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 40626589 - 40626520
Alignment:
Q  252 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  40626589 tttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggat 40626520  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 6457717 - 6457653
Alignment:
Q  253 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6457717 ttatgctattaggtaattaacccaccaaaaattaaggataaaaataacaaagggtggataagata 6457653  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 1529661 - 1529726
Alignment:
Q  240 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 305  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||| || ||||||||    
T  1529661 gcgcttaatagttttatgctaccagattgctaacccaccaaaaatcaaggataagaacaacaaagg 1529726  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 18665262 - 18665224
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtg 308  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  18665262 taacccaccaaaaattaaggataaaattaacaaagggtg 18665224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 40054458 - 40054527
Alignment:
Q  252 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||| |||| |||||| ||||||| | |||| ||||||| ||||||||||||| | |||||||||||||    
T  40054458 tttatcctattaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggat 40054527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 41643938 - 41643987
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 483  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| |||||    
T  41643938 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacat 41643987  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 3044871 - 3044918
Alignment:
Q  252 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataa 299  Q
    |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  3044871 tttaagctatcatgttgctaacctaccaaaaattaaggataaaaataa 3044918  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 6177841 - 6177884
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 477  Q
    |||||||||||||| ||||||||||||||||||| | |||||||    
T  6177841 atttgtgtatttaattcatgtcacgtcagattatatggtgtatt 6177884  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 19073424 - 19073473
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 483  Q
    ||||||||||||||  |||||||||||||||||| | ||||||| |||||    
T  19073424 atttgtgtatttaatccatgtcacgtcagattatatggtgtattccacat 19073473  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 39111666 - 39111703
Alignment:
Q  280 aaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||||||||||||||||||||||||||||  |||||||    
T  39111666 aaaattaaggataaaaataacaaagggtgtgtaggata 39111703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 18059345 - 18059301
Alignment:
Q  433 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 477  Q
    ||||||||||||||| |||||||| |||||||||| | |||||||    
T  18059345 tatttgtgtatttaattcatgtcatgtcagattatatggtgtatt 18059301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 6768381 - 6768312
Alignment:
Q  253 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggata 322  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6768381 ttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggata 6768312  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 26793882 - 26793808
Alignment:
Q  247 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||  |||||||||||    
T  26793882 atagttttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggat 26793808  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 9383222 - 9383287
Alignment:
Q  252 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||  |||||||    
T  9383222 tttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggata 9383287  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 42471963 - 42472020
Alignment:
Q  247 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 304  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  42471963 atagctttatgctatcaggttgttaacccaccaaaaactaaggattaaaattacaaag 42472020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 50004909 - 50004960
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  50004909 taacccaccaaaaactaaggataaaaataacaaagggtgattaggataggat 50004960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 19806758 - 19806820
Alignment:
Q  259 tatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||||||||||||||||||||||| ||||||| | || ||||||| ||| ||||||||||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggat 19806820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 49236292 - 49236219
Alignment:
Q  247 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggatagga 320  Q
    ||||||||| | |||||||||| ||||||||||||||  |||||||  ||||| ||||| ||| ||||||||||    
T  49236292 atagttttacgatatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggatagga 49236219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 38332376 - 38332423
Alignment:
Q  258 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 305  Q
    ||||||| ||| |||||| ||||||||||| |||||||||||||||||    
T  38332376 ctatcagattgctaaccctccaaaaattaaagataaaaataacaaagg 38332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 4076342 - 4076410
Alignment:
Q  253 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||| ||||||||||  ||| |||||||||| ||||||| | || ||||||| ||| ||||||||||||    
T  4076342 ttatcctatcaggttcctaatccaccaaaaactaaggattagaaaaacaaagagtgaataggataggat 4076410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 24429815 - 24429741
Alignment:
Q  247 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  || ||||||||    
T  24429815 atagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggat 24429741  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 41482419 - 41482480
Alignment:
Q  256 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggata 41482480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 39645006 - 39644955
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  39645006 taacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggat 39644955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 45980471 - 45980504
Alignment:
Q  272 acccaccaaaaattaaggataaaaataacaaagg 305  Q
    |||||||||||| |||||||||||||||||||||    
T  45980471 acccaccaaaaagtaaggataaaaataacaaagg 45980504  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 2333983 - 2334050
Alignment:
Q  253 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||||||| ||||| ||||| ||||||||  |  ||||||||||||||| |||| ||||||||||||    
T  2333983 ttatgctatc-ggttgctaaccaaccaaaaaccagagataaaaataacaaaaggtgaataggataggat 2334050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 41482548 - 41482591
Alignment:
Q  330 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaacg 374  Q
    |||||||| |||| ||||||||||||||||| |||||||||||||    
T  41482548 gatagttt-tatcctatcatgtcttcctatcatgtgcaccaaacg 41482591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 45884641 - 45884689
Alignment:
Q  256 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 304  Q
    |||| |||| |||||||||| ||||||| | ||||||||||||||||||    
T  45884641 tgctttcagattgttaacccgccaaaaacttaggataaaaataacaaag 45884689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 6267503 - 6267438
Alignment:
Q  418 aaatggtcaaccgagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 483  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||    
T  6267503 aaatggtcaaccgagtatttgtgtatttaagtcatgccacgtcaggttatttggtgtattatacat 6267438  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 31734435 - 31734371
Alignment:
Q  253 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    ||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  31734435 ttatgttatcatgttgttaatccaccaaaaactaaggataaaaataacaaagggtggatgggata 31734371  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 39283824 - 39283758
Alignment:
Q  255 atgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||||||||||||| |||||||||||||||||| |||||||| || |||||||| ||| ||||||||    
T  39283824 atgctatcaggttgctaacccaccaaaaattaaagataaaaaaaataaagggtgaatatgataggat 39283758  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 22573259 - 22573186
Alignment:
Q  248 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||| ||| ||||||| |  ||||||||||||    
T  22573259 tagttttatcctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggat 22573186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 6267585 - 6267545
Alignment:
Q  380 taaggcgattgcagaaaggcgagctttgtggttgttggaaa 420  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  6267585 taaggcgattgcggaaaggcgagctttgtggttgttggaaa 6267545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 11066585 - 11066534
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||| |||||||||||||||||||||||||||||| ||  |||||||||||    
T  11066585 taacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggat 11066534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 9028625 - 9028698
Alignment:
Q  248 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||| ||| ||||||||||| ||||||| ||||||  |||||||| ||| ||||||| |  ||||||||||||    
T  9028625 tagttatatcctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggat 9028698  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 38503855 - 38503904
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtggataggatagg 319  Q
    |||||||||||||| |||  |||||||||||||||||||  |||||||||    
T  38503855 taacccaccaaaaactaaaaataaaaataacaaagggtgagtaggatagg 38503904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 45850748 - 45850824
Alignment:
Q  250 gttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggatataaa 326  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||| || |||| ||| ||||    
T  45850748 gttttatgctatcaggttgctaacccaccaaaaatcaaggataagaataacaaaggctggctaagataagatttaaa 45850824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 20524966 - 20524907
Alignment:
Q  258 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||||| |||||||||||||||||||| |||||| ||||| ||||||| | |||||||||    
T  20524966 ctatcaagttgttaacccaccaaaaatcaaggattaaaattacaaaggatagataggata 20524907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 32491023 - 32490957
Alignment:
Q  252 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggatag 318  Q
    ||||| ||||||||||| ||||||| | |||| ||||||| ||||||||||||| | ||||||||||    
T  32491023 tttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggatag 32490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 38457844 - 38457788
Alignment:
Q  265 gttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||| |||||||||||| | ||||||||||| ||||||| |||| ||||||||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggat 38457788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 51976302 - 51976243
Alignment:
Q  258 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    ||||||||||||||||||||||||| | |||||| | || |||||| |||| ||||||||    
T  51976302 ctatcaggttgttaacccaccaaaattcaaggattagaaaaacaaatggtgaataggata 51976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 40417069 - 40416999
Alignment:
Q  251 ttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||| ||||||||||||| ||||| | ||||||  |||||||| ||||| ||||||| | |||||||||||    
T  40417069 ttttgtgctatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggat 40416999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 467
Target Start/End: Complemental strand, 7568701 - 7568668
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattat 467  Q
    |||||||||||||| |||||||||||||||||||    
T  7568701 atttgtgtatttaattcatgtcacgtcagattat 7568668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 45818592 - 45818649
Alignment:
Q  247 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 304  Q
    |||| |||||||||||| ||||  ||| ||||||||| |||||||||||| |||||||    
T  45818592 ataggtttatgctatcaagttgccaactcaccaaaaactaaggataaaaacaacaaag 45818649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 44764090 - 44764134
Alignment:
Q  277 ccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  44764090 ccaaaaactaaggataaaaataaaaaaaggtgggtaggataggat 44764134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 16342697 - 16342752
Alignment:
Q  240 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaa 295  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  16342697 gcgcttgatagatttatgctatcaggttgctaacccaccaaaaattaaggataaaa 16342752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 8547436 - 8547495
Alignment:
Q  258 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||||| |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  8547436 ctatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgata 8547495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 317
Target Start/End: Original strand, 8573796 - 8573848
Alignment:
Q  265 gttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgata 8573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 377
Target Start/End: Original strand, 14228002 - 14228048
Alignment:
Q  330 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaacgact 377  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  14228002 gatagttt-tatcatatcatgtcttcttatcctatgcaccaaacgact 14228048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 129102 - 129163
Alignment:
Q  260 atcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    |||| |||| || |||| |||||| ||| |||||||||||||||||||| ||| ||||||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggat 129163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 13109811 - 13109764
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13109811 taacccaccaaaaactaaggataaaaataacaaagggtggataggata 13109764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 34731389 - 34731320
Alignment:
Q  252 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 321  Q
    ||||| ||||||||||| ||||||| | |||| ||||||| ||||||||||||| | |||||||||||||    
T  34731389 tttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggat 34731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 13039817 - 13039770
Alignment:
Q  270 taacccaccaaaaattaaggataaaaataacaaagggtggataggata 317  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  13039817 taacccaccaaaaactaaggataaaaataataaaggatggataggata 13039770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 434 - 483
Target Start/End: Original strand, 31878449 - 31878498
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 483  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| |||||    
T  31878449 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacat 31878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 15416354 - 15416395
Alignment:
Q  330 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaa 372  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  15416354 gatagttt-tatcatatcatgtcttcctatcatgtgcaccaaa 15416395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 16290716 - 16290753
Alignment:
Q  259 tatcaggttgttaacccaccaaaaattaaggataaaaa 296  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  16290716 tatcaagttgctaacccaccaaaaattaaggataaaaa 16290753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 25653646 - 25653699
Alignment:
Q  430 gagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacat 483  Q
    |||||||||||||||||| |||| |||||||||||| | | ||||||| |||||    
T  25653646 gagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacat 25653699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Complemental strand, 24799 - 24756
Alignment:
Q  434 atttgtgtatttaagtcatgtcacgtcagattatttagtgtatt 477  Q
    |||||||||||||| ||||||||||||||||||| | |||||||    
T  24799 atttgtgtatttaattcatgtcacgtcagattatatggtgtatt 24756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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