View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_low_31 (Length: 321)

Name: NF0683_low_31
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_low_31
NF0683_low_31
[»] chr3 (3 HSPs)
chr3 (78-232)||(10791881-10792046)
chr3 (146-226)||(14683746-14683826)
chr3 (168-229)||(7342060-7342121)
[»] chr1 (2 HSPs)
chr1 (78-232)||(41369247-41369412)
chr1 (146-230)||(22085857-22085941)
[»] chr8 (2 HSPs)
chr8 (80-232)||(1734689-1734852)
chr8 (171-227)||(22333995-22334051)
[»] chr7 (1 HSPs)
chr7 (82-230)||(14324305-14324466)
[»] scaffold0101 (2 HSPs)
scaffold0101 (146-230)||(46862-46946)
scaffold0101 (146-230)||(51500-51584)
[»] chr2 (4 HSPs)
chr2 (146-230)||(24950588-24950672)
chr2 (168-226)||(23190806-23190864)
chr2 (168-226)||(23612061-23612119)
chr2 (168-226)||(23615716-23615774)
[»] scaffold0323 (1 HSPs)
scaffold0323 (171-226)||(4011-4066)
[»] scaffold0051 (1 HSPs)
scaffold0051 (168-226)||(79275-79333)
[»] scaffold0193 (1 HSPs)
scaffold0193 (145-226)||(27356-27437)
[»] chr4 (2 HSPs)
chr4 (168-228)||(14557476-14557536)
chr4 (168-226)||(13277812-13277870)
[»] scaffold0040 (1 HSPs)
scaffold0040 (147-226)||(40796-40875)
[»] chr6 (1 HSPs)
chr6 (168-226)||(23496035-23496093)
[»] scaffold1701 (1 HSPs)
scaffold1701 (82-190)||(1336-1457)
[»] chr5 (1 HSPs)
chr5 (168-230)||(21529793-21529855)
[»] scaffold0270 (1 HSPs)
scaffold0270 (168-228)||(15798-15858)
[»] scaffold0081 (1 HSPs)
scaffold0081 (146-226)||(44842-44922)
[»] scaffold0022 (1 HSPs)
scaffold0022 (168-220)||(57982-58034)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 10791881 - 10792046
Alignment:
Q  78 tgagatgaacagtattctggatcgtaaggtagaacaaggggatggttaaaggagtaaaagtaactaaaa-----------agagcaaaagtatgactcgc 166  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||           ||||||||||||||||||||    
T  10791881 tgagatgaacagtattttggatcgtaaggtagaagaaggggatggtgaaaagagtaaaagtaactaaaaggagcaaagtaagagcaaaagtatgactcgc 10791980  T
Q  167 agtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatgat 232  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791981 agtcatatataacttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatgat 10792046  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 14683826 - 14683746
Alignment:
Q  146 aagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    ||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  14683826 aagagtaaaagtatgactcagggtcatatatagcttttgatactggacagatgtcaatcatcgcatggaacagttgttttt 14683746  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 7342121 - 7342060
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgat 229  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||||||    
T  7342121 gtcatatatagcttttgatattggacagatgtcaatcatcgcatggaacggttgtttttgat 7342060  T

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Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 78 - 232
Target Start/End: Complemental strand, 41369412 - 41369247
Alignment:
Q  78 tgagatgaacagtattctggatcgtaaggtagaacaaggggatggttaaaggagtaaaagtaactaaa-----------aagagcaaaagtatgactcgc 166  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||| ||| |||||||||||||||||           |||||||||||||||||||      
T  41369412 tgagatgaacagtactttggatcgtaaggtagaagaaggggatggtgaaaagagtaaaagtaactaaaggaaatgaagtaagagcaaaagtatgactcat 41369313  T
Q  167 agtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatgat 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  41369312 agtcatatatagcttttgatactggacagatgtcaatcatcgcgtggaacagttgttttttatgat 41369247  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 22085857 - 22085941
Alignment:
Q  146 aagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatg 230  Q
    ||||| |||||||||||||   |||||||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||    
T  22085857 aagagtaaaagtatgactcagggtcatatatagcttttgatgttggacagatgtcaatcatcgcatggaacagttgtttttgatg 22085941  T

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Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 1734689 - 1734852
Alignment:
Q  80 agatgaacagtattctggatcgtaaggtagaacaaggggatggttaaaggagtaaaagtaactaaaa-----------agagcaaaagtatgactcgcag 168  Q
    |||||||||||| | |||||||||| |||||| ||||||||||| ||| ||||||||||||||||||           ||||||||||||||||||  ||    
T  1734689 agatgaacagtactttggatcgtaaagtagaagaaggggatggtgaaaagagtaaaagtaactaaaagaaacgaagtaagagcaaaagtatgactcagag 1734788  T
Q  169 tcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatgat 232  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  1734789 tcatatatagcttttgatattggacagatgtcaatcatcgcgtggaatagttgtttttgatgat 1734852  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 22334051 - 22333995
Alignment:
Q  171 atatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttg 227  Q
    ||||||||| ||||||| | ||||||||||||  |||||||||| | ||||||||||    
T  22334051 atatatagcctttgatatttgacagatgtcaacaatcgcgtggaacggttgtttttg 22333995  T

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Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 82 - 230
Target Start/End: Complemental strand, 14324466 - 14324305
Alignment:
Q  82 atgaacagtattctgga-tcgtaaggtagaacaaggggatggttaaaggagtaaaagtaactaaaaaga------------gcaaaagtatgactcgcag 168  Q
    |||||||||||| || | ||||||||||||| ||||||||||| ||| |||||||| |||||||| |||            | |||||||||||||   |    
T  14324466 atgaacagtattttgaaatcgtaaggtagaagaaggggatggtgaaaagagtaaaaataactaaagagaaacgaagtaaaagtaaaagtatgactcaggg 14324367  T
Q  169 tcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatg 230  Q
    |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  14324366 tcatatatagcttttgatactgaacagatgtcaatcatcgcatggaacagttgtttttgatg 14324305  T

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Target: scaffold0101 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 46946 - 46862
Alignment:
Q  146 aagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatg 230  Q
    ||||| |||||||||||||   |||||||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||    
T  46946 aagagtaaaagtatgactcagggtcatatatagcttttgatgttggacagatgtcaatcatcgcatggaacagttgtttttgatg 46862  T

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Target: scaffold0101; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 51584 - 51500
Alignment:
Q  146 aagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatg 230  Q
    ||||| |||||||||||||   |||||||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||    
T  51584 aagagtaaaagtatgactcagggtcatatatagcttttgatgttggacagatgtcaatcatcgcatggaacagttgtttttgatg 51500  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 24950588 - 24950672
Alignment:
Q  146 aagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatg 230  Q
    ||||| |||| ||||||||   |||||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||    
T  24950588 aagagtaaaaatatgactcagggtcatatatagcttttgatattggacagatgtcaatcatcgcatggaacggttgtttttgatg 24950672  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 23190864 - 23190806
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||||||||| ||||||  | ||||||||||||||||||| |||| |||||||||||    
T  23190864 gtcatatatagcctttgatgtttgacagatgtcaatcatcgcatggaacagttgttttt 23190806  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 23612119 - 23612061
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||||||||| ||||||  | ||||||||||||||||||| |||| |||||||||||    
T  23612119 gtcatatatagcctttgatgtttgacagatgtcaatcatcgcatggaacagttgttttt 23612061  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 23615774 - 23615716
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||||||||| ||||||  | ||||||||||||||||||| |||| |||||||||||    
T  23615774 gtcatatatagcctttgatgtttgacagatgtcaatcatcgcatggaacagttgttttt 23615716  T

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Target: scaffold0323 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 4011 - 4066
Alignment:
Q  171 atatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||| |||||||||||    
T  4011 atatatagcctttgatattggacagatgtcaatcatcgcatggaacagttgttttt 4066  T

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Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 79275 - 79333
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||||||||| ||||||  ||||||||||||||||||||| |||| |||||||||||    
T  79275 gtcatatatagcctttgatgttggacagatgtcaatcatcgcatggaacagttgttttt 79333  T

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Target: scaffold0193 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 27437 - 27356
Alignment:
Q  145 aaagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||| |||||||||||||   |||||||||||| ||||||| | ||||||||||||| ||||| |||  |||||||||||    
T  27437 aaagagtaaaagtatgactcaaggtcatatatagcctttgatatttgacagatgtcaatgatcgcatgggacagttgttttt 27356  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 14557536 - 14557476
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttga 228  Q
    |||||||||||| |||||| |  ||||||||||||||||||| |||| |||||||||||||    
T  14557536 gtcatatatagcctttgatgcctgacagatgtcaatcatcgcatggaacagttgtttttga 14557476  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 13277870 - 13277812
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||||||||| ||||||  | |||||||||||| ||||||||||| |||||||||||    
T  13277870 gtcatatatagcctttgatgtttgacagatgtcaaccatcgcgtggaacagttgttttt 13277812  T

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Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 40796 - 40875
Alignment:
Q  147 agagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||| |||||||||||  |  |||||||||||| ||||||  | |||||||||||| ||||||||||| |||||||||||    
T  40796 agagtaaaagtatgacctgaggtcatatatagcctttgatgtttgacagatgtcaaccatcgcgtggaacagttgttttt 40875  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 23496035 - 23496093
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    |||||||||||| ||||||  | ||||||||||||||||||| |||| |||||||||||    
T  23496035 gtcatatatagcctttgatgtttgacagatgtcaatcatcgcatggaacagttgttttt 23496093  T

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Target: scaffold1701 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 1336 - 1457
Alignment:
Q  82 atgaacagtattctgga-tcgtaaggtagaacaaggggatggttaaaggagtaaaagtaactaaa------------aagagcaaaagtatgactcgcag 168  Q
    |||||||||||| || | ||||||||||||| ||||||||||| ||| |||||||| ||||||||            ||||| |||||||||||||   |    
T  1336 atgaacagtattttgaaatcgtaaggtagaagaaggggatggtgaaaagagtaaaaataactaaagagaaacgaagtaagagtaaaagtatgactcaggg 1435  T
Q  169 tcatatatagcttttgatactg 190  Q
    ||||||||||||||||||||||    
T  1436 tcatatatagcttttgatactg 1457  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 21529793 - 21529855
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttgatg 230  Q
    |||||||||||| ||||||| | ||||||||||||  ||||| |||| | |||||||||||||    
T  21529793 gtcatatatagcctttgatatttgacagatgtcaacgatcgcatggaacggttgtttttgatg 21529855  T

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Target: scaffold0270 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 15858 - 15798
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgtttttga 228  Q
    |||||||||||| ||||||    |||||||| ||| ||||||||||| |||||||||||||    
T  15858 gtcatatatagcctttgatgtctgacagatgacaaccatcgcgtggaacagttgtttttga 15798  T

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Target: scaffold0081 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 44922 - 44842
Alignment:
Q  146 aagagcaaaagtatgactcgcagtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagttgttttt 226  Q
    ||||| |||||||||||||   |||||||||||| ||||||| | ||||||||||| | ||||| |||  | |||||||||    
T  44922 aagagtaaaagtatgactcaaggtcatatatagcctttgatatttgacagatgtcattgatcgcatgggacggttgttttt 44842  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 57982 - 58034
Alignment:
Q  168 gtcatatatagcttttgatactggacagatgtcaatcatcgcgtggagcagtt 220  Q
    |||||||||||| ||||||  | |||||||||||| ||||||||||| |||||    
T  57982 gtcatatatagcctttgatgtttgacagatgtcaaccatcgcgtggaacagtt 58034  T

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