View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_32 (Length: 318)
Name: NF0683_low_32
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 7535269 - 7535091
Alignment:
| Q |
38 |
aggcacactcgtagaagtactagatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatg |
137 |
Q |
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| T |
7535269 |
aggcacactcgtagaagtactagatagtttttgcagggatggtaaagtgaatgaagcggttgacattttgcaagtgttggaaaagctttatattcatatg |
7535170 |
T |
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| Q |
138 |
gatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagac |
216 |
Q |
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| T |
7535169 |
gatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagac |
7535091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 7449713 - 7449553
Alignment:
| Q |
56 |
actagatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttg |
155 |
Q |
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| T |
7449713 |
actagatagtttttgcagggatggtaaagtgaaggaagcagttgaaaatttgcaaaagttggaaaagcttcatattcatgtggatttgcagcgttgtttg |
7449614 |
T |
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| Q |
156 |
caattaatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacagac |
216 |
Q |
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| T |
7449613 |
caattaatgcgcatttgtgggaaggctaagtctcttgaggaggcaagagttgtacacagac |
7449553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 18664698 - 18664543
Alignment:
| Q |
60 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
159 |
Q |
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| T |
18664698 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcttgtagatttggatcgttgtttgcgat |
18664599 |
T |
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| Q |
160 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacaga |
215 |
Q |
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| T |
18664598 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacaga |
18664543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 18664955 - 18664845
Alignment:
| Q |
103 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
202 |
Q |
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| T |
18664955 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
18664856 |
T |
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| Q |
203 |
agttgtacaca |
213 |
Q |
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| T |
18664855 |
agttgtacaca |
18664845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 215
Target Start/End: Original strand, 15079130 - 15079285
Alignment:
| Q |
60 |
gatagtttttgcagggatggtaaagtgaatgaatcggttgacattttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaat |
159 |
Q |
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||||||| ||||| ||| ||| ||||||| ||| | |||| ||||||||||||| |||||| || |||||||| | |||||| | ||||||||| || |
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| T |
15079130 |
gatagttcttgcatggagggtgaagtgaaggaagcaattgatgttttgcaagtgttagaaaagtttcatattcatgtagatttggatcgttgtttgagat |
15079229 |
T |
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| Q |
160 |
taatgcacgtttgtgggaagactaagtctcttgaagaggcaagagttgtacacaga |
215 |
Q |
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| T |
15079230 |
taatgcaacaatgtgggaagaccaagtctcttgaagaggcaaaagttgtacacaga |
15079285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 15078873 - 15078985
Alignment:
| Q |
103 |
ttttgcaagtgttggaaaagctttatattcatatggatttgcagcgttgtttgcaattaatgcacgtttgtgggaagactaagtctcttgaagaggcaag |
202 |
Q |
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| T |
15078873 |
ttttgcaagagttagaaaagcttcatacttatgtggatttgtatctttgtttgcgattaatgcaactgtgtggaaaggctgagtttcttgaagaggcaaa |
15078972 |
T |
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| Q |
203 |
agttgtacacaga |
215 |
Q |
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| T |
15078973 |
agttgtacacaga |
15078985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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