View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_34 (Length: 304)
Name: NF0683_low_34
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 41901156 - 41901033
Alignment:
| Q |
66 |
aatatgcaaaacaatcccaatcacaatacatcctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccact |
165 |
Q |
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||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41901156 |
aatatgcaaaacacccacaatcacaatacaccctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccatt |
41901057 |
T |
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| Q |
166 |
acctacaaagcatgtagaatatcc |
189 |
Q |
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| T |
41901056 |
acctacaaagcatgtagaatatcc |
41901033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 41900815 - 41900709
Alignment:
| Q |
83 |
caatcacaatacatcctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccactacctacaaagcatgtag |
182 |
Q |
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||||||||||| | || | |||||||||||||||| ||||||||||| ||||||||||||||||||| | | |||||||||| ||| |||| |||| | |
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| T |
41900815 |
caatcacaatataccccacatcatgcaaaacactcacacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaa |
41900716 |
T |
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| Q |
183 |
aatatcc |
189 |
Q |
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||||||| |
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| T |
41900715 |
aatatcc |
41900709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 41900707 - 41900626
Alignment:
| Q |
83 |
caatcacaatacatcctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccac |
164 |
Q |
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||||||||||||| || | |||||||||||||| | ||||||||||| |||||| |||||||||||| | |||||||||||| |
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| T |
41900707 |
caatcacaatacaccccacatcatgcaaaacacgcacacctctaccccaaattagctccattatatacatacaaatctccac |
41900626 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 41900904 - 41900817
Alignment:
| Q |
102 |
atcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccactacctacaaagcatgtagaatatcc |
189 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| |||||||| | ||||||| |||| |||| ||||| ||| | ||||||| |
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| T |
41900904 |
atcatgcaaaacactcacacctctaccccaaattaactcaattatatacatacaaatccccaccacctccaaagtatgcaaaatatcc |
41900817 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 41901307 - 41901249
Alignment:
| Q |
131 |
aaattaactccattatataaacacaaatctccactacctacaaagcatgtagaatatcc |
189 |
Q |
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|||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||| |
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| T |
41901307 |
aaattaactccattgtataaacacaaatctccactctctacgaagcatgcagaatatcc |
41901249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 19857143 - 19857198
Alignment:
| Q |
186 |
atcctcctcaaattcctccagtactctccatatggagcaaaccccattgccctatg |
241 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19857143 |
atcctcctcaaattcctccagtactctccatacggagcaaaccccattgccctatg |
19857198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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