View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_42 (Length: 268)
Name: NF0683_low_42
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 3050574 - 3050445
Alignment:
| Q |
109 |
ctactcaagattgttatacatgtgtccataatatcaactattgatttatttaatcaacgattgatattagccgtttttaattgatgagatcatgagtgct |
208 |
Q |
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| T |
3050574 |
ctactcaagattgttatacatgtgtccataatatcaactattgatttatttaatcaacgattgatattagccgtttttaattgatgagatcatgagtgct |
3050475 |
T |
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| Q |
209 |
cccaatgatttgagttacccgggttggtat |
238 |
Q |
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| T |
3050474 |
cccaatgatttgagttacccgggttggtat |
3050445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 3037136 - 3037019
Alignment:
| Q |
123 |
tatacatgtgtccataatatcaactattgatttatttaatca-------acgattgatattag--ccgtttttaattgatgagatcatgagtgctcccaa |
213 |
Q |
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| T |
3037136 |
tatatatgtgtctataatatcaaccattgatttgtttaatcacaaatcaatgattgatattatacccgcttttaattgatgaaatcatgagtgctcccgg |
3037037 |
T |
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| Q |
214 |
tgatttgagttacccggg |
231 |
Q |
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| T |
3037036 |
tgatttgagttactcggg |
3037019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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