View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_43 (Length: 263)
Name: NF0683_low_43
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_43 |
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| [»] scaffold0057 (1 HSPs) |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 40177764 - 40178006
Alignment:
| Q |
1 |
aaacaaccaacatcttttcacctagacacaaagacccttannnnnnnnnnnngaaccaaatatattagatagcattgctgatataacttatttccaagat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
40177764 |
aaacaaccaacaccttttcacctagacacaaagacccttatttttgttttttgaaccaaatatattagatagcatcgttgatataacttatttccaagat |
40177863 |
T |
|
| Q |
101 |
agggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatgttggatttgatatcagatttagaataagtttatttgagttaggatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40177864 |
agggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatgttggatttgatatcagatttagaataagtttatttgagttaggatt |
40177963 |
T |
|
| Q |
201 |
ccccgctttcataaaacaaagatggtgatgtgattgatgatgt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40177964 |
ccccgctttcataaaacaaagatggtgatgtgattgctgatgt |
40178006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 43732057 - 43731970
Alignment:
| Q |
78 |
ctgatataacttatttccaagatagggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatgttggatttgat |
165 |
Q |
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|||||||| ||||||| ||||| | || |||||| | ||||||||||||||| | | || ||||||||||||||||||||||||| |
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| T |
43732057 |
ctgatatagcttattttcaagacaaggccatattaactccaaagaattcaattctcaaacatctaaacgattatatgttggatttgat |
43731970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23989606 - 23989848
Alignment:
| Q |
1 |
aaacaaccaacatcttttcacctagacacaaagacccttannnnnnnnnnnngaaccaaatatattagatagcattgctgatataacttatttccaagat |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
23989606 |
aaacaaccaacaccttttcacctagacacaaagatccttatttttgttttttgaaccaaatatattagatagcatcactgatataacttattttcaagat |
23989705 |
T |
|
| Q |
101 |
agggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatgttggatttgatatcagatttagaataagtttatttgagttaggatt |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23989706 |
agggttatattagcaccaaagaatttaattgttgatcaaataaacgattatatgttggatttgatatcagatttagaataagtttatttgagttaagatt |
23989805 |
T |
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| Q |
201 |
ccccgctttcataaaacaaagatggtgatgtgattgatgatgt |
243 |
Q |
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| T |
23989806 |
ccccgctttcataaaacaaagatggtgatgtgattgatgatgt |
23989848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 243
Target Start/End: Complemental strand, 25472049 - 25471860
Alignment:
| Q |
56 |
ccaaatatattagatagcattgctgatataacttatttccaaga--tagggttatattagcaccaaagaattcaattgttgatcaaataaacgattatat |
153 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
25472049 |
ccaaatatattagatagcatcactgatataacttatatccaagacatagggctatattagcaccaacaaattcaattgttgatcaaataaatgattatat |
25471950 |
T |
|
| Q |
154 |
gttggatttgatatcagatttagaataagtttatttgagttaggattccccgctttcataaaacaaagatggtgatgtgattgatgatgt |
243 |
Q |
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| T |
25471949 |
gttggatttgataggatatttacaaaaagtttatttgagttaggattccctgctttcacaaaacaaagattgtgatgtgatttatgatgt |
25471860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 23995048 - 23995084
Alignment:
| Q |
4 |
caaccaacatcttttcacctagacacaaagaccctta |
40 |
Q |
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||||||||| ||||||||||| ||||||||||||||| |
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| T |
23995048 |
caaccaacaccttttcacctaaacacaaagaccctta |
23995084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 8044 - 7911
Alignment:
| Q |
110 |
ttagcaccaaagaattcaattgttgatcaaataaacgattatatgttggatttgatatcagatttagaataagtttatttgagttaggattccccgcttt |
209 |
Q |
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||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| | | | |||| |||| |||||| |||| ||||||||||||| |
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| T |
8044 |
ttagctccaaagaatacaattgttgatcaaataaacgagtatatgttggatttgatacctggtgaagaaaaagtctatttgtgttatgattccccgcttt |
7945 |
T |
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| Q |
210 |
cataaaacaaagatggtgatgtgattgatgatgt |
243 |
Q |
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|| | |||||||||| ||||| |||||||||||| |
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| T |
7944 |
cacataacaaagatgttgatgcgattgatgatgt |
7911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 24977 - 25086
Alignment:
| Q |
56 |
ccaaatatattagatagcattgctgatataacttatttccaagatagggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatgt |
155 |
Q |
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|||||||||||||||||||| | |||||||||||||| ||||| | || |||||| | |||||||||||||||| | ||||||||||||||||||| |
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| T |
24977 |
ccaaatatattagatagcatgaccgatataacttattttcaagacaaggccatattaacctcaaagaattcaattgtcaaacaaataaacgattatatgt |
25076 |
T |
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| Q |
156 |
tggatttgat |
165 |
Q |
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|||||||||| |
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| T |
25077 |
tggatttgat |
25086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 243
Target Start/End: Original strand, 47507284 - 47507400
Alignment:
| Q |
127 |
aattgttgatcaaataaacgattatatgttggatttgatatcagatttagaataagtttatttgagttaggattccccgctttcataaaacaaagatggt |
226 |
Q |
| |
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||||||||||||||||||||| |||||||| ||||||||| ||| | |||| |||| |||| || ||| ||||| ||||||||| | |||||||||| | |
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| T |
47507284 |
aattgttgatcaaataaacgagtatatgttagatttgataccaggtgaagaaaaagtatattcgaattatgattcaccgctttcacataacaaagatgct |
47507383 |
T |
|
| Q |
227 |
gatgtgattgatgatgt |
243 |
Q |
| |
|
|||||||||||||||| |
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| T |
47507384 |
aatgtgattgatgatgt |
47507400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 9075610 - 9075720
Alignment:
| Q |
56 |
ccaaatatattagatagcattgctgatataacttatttccaagatagggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatg- |
154 |
Q |
| |
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|||| ||||||||||||||| |||||||| ||||||| ||||| | || |||||| | |||||||||||||||| | |||||||||||||||||| |
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| T |
9075610 |
ccaagtatattagatagcatgactgatatagcttattttcaagacaaggccatattaactacaaagaattcaattgtcaaacaaataaacgattatatgt |
9075709 |
T |
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| Q |
155 |
ttggatttgat |
165 |
Q |
| |
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||||||||||| |
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| T |
9075710 |
ttggatttgat |
9075720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 5337365 - 5337452
Alignment:
| Q |
78 |
ctgatataacttatttccaagatagggttatattagcaccaaagaattcaattgttgatcaaataaacgattatatgttggatttgat |
165 |
Q |
| |
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|||||||| ||||||| ||||| | | |||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
5337365 |
ctgatatagcttattttcaagacaagaccatattaactccaaagaattcaattgtcaaacaaataaacgattatatgttggatttgat |
5337452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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