View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_48 (Length: 234)
Name: NF0683_low_48
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 46636024 - 46636172
Alignment:
| Q |
1 |
acttaaagtatcctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgattttagtctttaattatctggttttgtttt |
100 |
Q |
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| T |
46636024 |
acttaaagtatgctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagccgcgattttagtctttaattatctggttttgtttt |
46636123 |
T |
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| Q |
101 |
cctatatttcttggcagatggtgtcctttaaccagaattataatgatat |
149 |
Q |
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| T |
46636124 |
cctatatttcttggcagatggtgtcctttaaccagaattataatgatat |
46636172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 46617327 - 46617468
Alignment:
| Q |
1 |
acttaaagtatcctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgattttagtctttaattatctggttttgtttt |
100 |
Q |
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|||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| | |||||| ||||||||||||||||| |
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| T |
46617327 |
actttaagtatgctcttgatgatgttatctaatctacatttcctttataa-atttcttcttaaggcatgatttgactctttagttatctggttttgtttt |
46617425 |
T |
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| Q |
101 |
cctatatttcttggcagatggtgtcctttaaccagaattataa |
143 |
Q |
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| T |
46617426 |
actatatttctttgcagatggtgtcctttaaccagaattataa |
46617468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 46644299 - 46644176
Alignment:
| Q |
14 |
tcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgattttagtctttaattatctggttttgttttcctatatttcttg |
113 |
Q |
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| T |
46644299 |
tcttgatgatgttatctaatctacatttcctttataacatttcttcttaagccatcatttgagtgtttagttatctgg-tttgttttcctatttttcttg |
46644201 |
T |
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| Q |
114 |
gcagatggtgtcctttaaccagaat |
138 |
Q |
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| T |
46644200 |
gcagatggtgtcctttgagcagaat |
46644176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 46628788 - 46628846
Alignment:
| Q |
91 |
gttttgttttcctatatttcttggcagatggtgtcctttaaccagaattataatgatat |
149 |
Q |
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| T |
46628788 |
gttttgttttcctatttttcttggcagatggtgttctttaagcagaattataatgatat |
46628846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 18376378 - 18376269
Alignment:
| Q |
6 |
aagtatcctcttgatgatgtaatctaatctacatttcctttataacatttcttcttaagctgcgattttagtctttaattatctggttttgttttcctat |
105 |
Q |
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|||||| |||| |||||||| |||||||||||||||||||||||| ||||| |||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
18376378 |
aagtatgctctagatgatgttatctaatctacatttcctttataa-atttcgtcttaagccatgatttgagtgtttaattatctggttttgttttcctat |
18376280 |
T |
|
| Q |
106 |
atttcttggca |
116 |
Q |
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|||||||||| |
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|
| T |
18376279 |
ttttcttggca |
18376269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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