View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0683_low_49 (Length: 229)

Name: NF0683_low_49
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0683_low_49
NF0683_low_49
[»] chr2 (18 HSPs)
chr2 (1-153)||(9321116-9321268)
chr2 (1-153)||(9328736-9328888)
chr2 (4-105)||(10347979-10348080)
chr2 (4-102)||(9065433-9065532)
chr2 (1-134)||(10336000-10336133)
chr2 (1-103)||(9274705-9274807)
chr2 (1-100)||(9060973-9061072)
chr2 (12-102)||(16269277-16269367)
chr2 (1-102)||(8573337-8573438)
chr2 (42-102)||(9316219-9316279)
chr2 (1-101)||(12018720-12018820)
chr2 (47-105)||(10353303-10353361)
chr2 (4-105)||(7115480-7115581)
chr2 (42-102)||(9292122-9292182)
chr2 (4-107)||(9284031-9284134)
chr2 (47-105)||(12012430-12012488)
chr2 (48-101)||(11987372-11987425)
chr2 (1-105)||(12005956-12006060)
[»] scaffold0667 (1 HSPs)
scaffold0667 (4-103)||(4673-4772)
[»] chr8 (1 HSPs)
chr8 (1-102)||(41966561-41966662)
[»] chr1 (4 HSPs)
chr1 (1-103)||(29467627-29467729)
chr1 (49-103)||(29423458-29423512)
chr1 (49-103)||(29453199-29453253)
chr1 (50-103)||(29443217-29443270)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9321268 - 9321116
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321268 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 9321169  T
Q  101 tgatgttgataatagtaatgagagttttgaaattgatgttgatatttttggag 153  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  9321168 tgatgttcataatagtaatgagagttttgaaattgatgttgatgttttgggag 9321116  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9328888 - 9328736
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9328888 ctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaattttcaatgtggttcctcttcc 9328789  T
Q  101 tgatgttgataatagtaatgagagttttgaaattgatgttgatatttttggag 153  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  9328788 tgatgttgataatagtaataagagttttgaaattgatgttgatgttttgggag 9328736  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 10348080 - 10347979
Alignment:
Q  4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||| ||||| |||||||||| ||| |||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||    
T  10348080 ttcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaattttcaatgaggttcctcttcctga 10347981  T
Q  104 tg 105  Q
    ||    
T  10347980 tg 10347979  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 9065433 - 9065532
Alignment:
Q  4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaa-tgtggttcctcttcctg 102  Q
    |||||| ||||||||| |||||||| | | | |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||    
T  9065433 ttcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaaattttcaattgaggttccccttcctg 9065532  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10336133 - 10336000
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    |||||||||||||||||||   |||||||| ||| ||||| |||| |||||||| ||| ||||| ||| ||||||| |||||||||| ||||||||||||    
T  10336133 ctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaatgaggttcctcttcc 10336034  T
Q  101 tgatgttgataa-tagtaatgagagttttgaaatt 134  Q
    |||||   |||| |||||||||||||||| |||||    
T  10336033 tgatg-aaataattagtaatgagagttttaaaatt 10336000  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9274807 - 9274705
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||| ||||||| | | || ||| ||  | ||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  9274807 ctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcctcttcc 9274708  T
Q  101 tga 103  Q
    |||    
T  9274707 tga 9274705  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9060973 - 9061072
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||| | ||| | |||||||||| ||| | | ||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||    
T  9060973 ctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttcaatgaggttcctcttcc 9061072  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 16269367 - 16269277
Alignment:
Q  12 ataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 102  Q
    |||||| | ||||||||||  || ||||||||||||||||| || || ||||||||||||||||| |||||||| | ||||||||||||||    
T  16269367 ataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtttaacctaacacttgagattttcaacgaggttcctcttcctg 16269277  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8573337 - 8573438
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||| | ||| | |||||||||| ||| | | ||||||  |||||||| ||||||||||| ||||||||||||||| | | ||||||||||||    
T  8573337 ctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttgaaattttctacgaggttcctcttcc 8573436  T
Q  101 tg 102  Q
    ||    
T  8573437 tg 8573438  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9316279 - 9316219
Alignment:
Q  42 ccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 102  Q
    |||| ||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||    
T  9316279 ccttgtttcattgtcgcgtttaacctaacacttgagattttcaatgtggttcctcttcctg 9316219  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 12018720 - 12018820
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||| ||||||||||||| |||| ||| |   || || ||||  |||||||| ||||||||||| ||||| || |||||||||| ||||||||||||    
T  12018720 ctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcctcttcc 12018819  T
Q  101 t 101  Q
    |    
T  12018820 t 12018820  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 10353361 - 10353303
Alignment:
Q  47 tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg 105  Q
    ||||||| | || ||||||||||||||||| | |||||||| |||||||||||||||||    
T  10353361 tttaattctcgcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatg 10353303  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 7115480 - 7115581
Alignment:
Q  4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||||||| |   |||||||| ||  | ||| |||| ||||||||| || |||||||||||||||||   ||||| || |||||||||||||||    
T  7115480 ttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctga 7115579  T
Q  104 tg 105  Q
    ||    
T  7115580 tg 7115581  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 9292182 - 9292122
Alignment:
Q  42 ccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctg 102  Q
    |||| ||| ||||| || ||||||||||||||||| | |||||||||||||||| ||||||    
T  9292182 ccttgtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctg 9292122  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 9284031 - 9284134
Alignment:
Q  4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    ||||||||||||||  |||||| |||| ||| | | | | || ||||||||| || |||||||||||||| ||  ||||||| | ||||||||||||||     
T  9284031 ttcactggataatggaaaagaatcttgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctgc 9284130  T
Q  104 tgtt 107  Q
    ||||    
T  9284131 tgtt 9284134  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 12012430 - 12012488
Alignment:
Q  47 tttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctgatg 105  Q
    ||||||||| || |||||||||||||||||  ||||||||| ||||||  |||||||||    
T  12012430 tttaattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctgatg 12012488  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 11987372 - 11987425
Alignment:
Q  48 ttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcct 101  Q
    |||||||| ||||||||||||||||| ||  ||||||||| ||||||| |||||    
T  11987372 ttaattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcct 11987425  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12005956 - 12006060
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||| |||   ||||||| || ||| |||||||    ||||||| | || |||||||||||||||||  ||||||| | ||||||| ||||    
T  12005956 ctcttcactggatgatggtcaagaaacctgatgggttacatcagcgtttaattttcgcgtttaacctaacacttgaggttttcaacgaggttccttttcc 12006055  T
Q  101 tgatg 105  Q
    |||||    
T  12006056 tgatg 12006060  T

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Target: scaffold0667 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 4772 - 4673
Alignment:
Q  4 ttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||||||| |||||||||||| ||| |||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  4772 ttcactggataatggcaaagaaacttgatgggttacatccttctctaattgtcgcttttaacctaacacttgaaattttcaatgaggttcctcttcctga 4673  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 41966561 - 41966662
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||||||||||||||| ||| |||||| ||||||||| |||| ||||||||| || ||||||||||||||||| ||||||||   ||||||||||||    
T  41966561 ctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattgtcgcgtttaacctaacacttgagattttcaaccaggttcctcttcc 41966660  T
Q  101 tg 102  Q
    ||    
T  41966661 tg 41966662  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29467627 - 29467729
Alignment:
Q  1 ctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcc 100  Q
    ||||||| ||||||||||  |||||||||| ||| |||||  ||| ||||||| | || ||||||||||  ||||| |||||||||| ||||||||||||    
T  29467627 ctcttcattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcc 29467726  T
Q  101 tga 103  Q
    |||    
T  29467727 tga 29467729  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 29423512 - 29423458
Alignment:
Q  49 taattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||| ||||||||||||| ||| |||||||||| ||||||| |||||||    
T  29423512 taattgttgcgtttaacctaacacatgagattttcaatgaggttccttttcctga 29423458  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 29453199 - 29453253
Alignment:
Q  49 taattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||||||| |||||||||||||  || |||||||||| ||||||| |||||||    
T  29453199 taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctga 29453253  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 29443217 - 29443270
Alignment:
Q  50 aattgttgcatttaacctaacacttgaaattttcaatgtggttcctcttcctga 103  Q
    |||||| || |||||||||||||| || |||||||||| ||||||| |||||||    
T  29443217 aattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctga 29443270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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