View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0683_low_50 (Length: 228)
Name: NF0683_low_50
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_50 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 12393547 - 12393489
Alignment:
| Q |
170 |
ctcaataaaatctctctttttctttcttgtttcttcaaaaccagcttgaaaaggaaaca |
228 |
Q |
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| T |
12393547 |
ctcaataaaatctctctttttctttcttgtttcttcaaaaccaacttgaaaaggaaaca |
12393489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 12393630 - 12393578
Alignment:
| Q |
86 |
aaaatgtgcattcacggcttcgtttagattgcctccatattcctgcacagtgc |
138 |
Q |
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| T |
12393630 |
aaaatgtgcattcacggcttcgtttagattgcctccatattcctgcacagtgc |
12393578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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