View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0683_low_7 (Length: 549)
Name: NF0683_low_7
Description: NF0683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0683_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 30048838 - 30049344
Alignment:
| Q |
14 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048838 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
30048937 |
T |
|
| Q |
114 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048938 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
30049037 |
T |
|
| Q |
214 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049038 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
30049137 |
T |
|
| Q |
314 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049138 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
30049237 |
T |
|
| Q |
414 |
ggtattgagtgatctgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049238 |
ggtattgagtgatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
30049337 |
T |
|
| Q |
514 |
agaacaa |
520 |
Q |
| |
|
||||||| |
|
|
| T |
30049338 |
agaacaa |
30049344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 7161195 - 7161549
Alignment:
| Q |
14 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7161195 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagactagatttgatgttctctactagtttgctttcaaggtt |
7161294 |
T |
|
| Q |
114 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161295 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
7161394 |
T |
|
| Q |
214 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
313 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161395 |
ggtaagattgaa----------------attgggctggatcggttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
7161478 |
T |
|
| Q |
314 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagct |
384 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161479 |
catggaattccaaaaaacaagacgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagct |
7161549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 380 - 516
Target Start/End: Original strand, 7162157 - 7162293
Alignment:
| Q |
380 |
cagctgcatcaaatcaagctatttggatcaaaaaggtattgagtgatctgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagc |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7162157 |
cagctgcatcaaatcaagctatttggatcaaaatggtattgagtgatctgaatcatatacaagaggaaccaattgtgctatggtgtgacaacaaatcagc |
7162256 |
T |
|
| Q |
480 |
tatagcaattgccaaaaatccaattcaacatggaaga |
516 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7162257 |
tatagcaactgccaaaaatccaattcaacatggaaga |
7162293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 18014622 - 18014651
Alignment:
| Q |
234 |
tgatagtgattgggctggatctattgatga |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18014622 |
tgatagtgattgggctggatctattgatga |
18014651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Complemental strand, 197177 - 196671
Alignment:
| Q |
14 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197177 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
197078 |
T |
|
| Q |
114 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197077 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
196978 |
T |
|
| Q |
214 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196977 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
196878 |
T |
|
| Q |
314 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196877 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
196778 |
T |
|
| Q |
414 |
ggtattgagtgatctgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196777 |
ggtattgagtgatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
196678 |
T |
|
| Q |
514 |
agaacaa |
520 |
Q |
| |
|
||||||| |
|
|
| T |
196677 |
agaacaa |
196671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 3945092 - 3945598
Alignment:
| Q |
14 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945092 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
3945191 |
T |
|
| Q |
114 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945192 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
3945291 |
T |
|
| Q |
214 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945292 |
agtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
3945391 |
T |
|
| Q |
314 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945392 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
3945491 |
T |
|
| Q |
414 |
ggtattgagtgatctgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945492 |
ggtattgagtgatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
3945591 |
T |
|
| Q |
514 |
agaacaa |
520 |
Q |
| |
|
||||||| |
|
|
| T |
3945592 |
agaacaa |
3945598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Complemental strand, 39950338 - 39949832
Alignment:
| Q |
14 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950338 |
aggcagatgttactcaatataggagtttgataggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
39950239 |
T |
|
| Q |
114 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950238 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
39950139 |
T |
|
| Q |
214 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950138 |
ggtaagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
39950039 |
T |
|
| Q |
314 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950038 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
39949939 |
T |
|
| Q |
414 |
ggtattgagtgatctgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
513 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949938 |
ggtattgagcgatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
39949839 |
T |
|
| Q |
514 |
agaacaa |
520 |
Q |
| |
|
||||||| |
|
|
| T |
39949838 |
agaacaa |
39949832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 22364720 - 22365226
Alignment:
| Q |
14 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttctaggtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22364720 |
aggcagatgttactcaatataggagtttgattggttgtcttctttacttgactgcaactagaccagatttgatgttctctgctagtttgctttcaaggtt |
22364819 |
T |
|
| Q |
114 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364820 |
catgcattcaccaagtgtaacacacttaggtgtgggcaaaagagtgttgaggtacataagaggtactactgattttggtatttggtacaacaaaggtgat |
22364919 |
T |
|
| Q |
214 |
ggtaagattgaaggctttgttgatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364920 |
ggtaagattgaaggctttgttgatagtgattgggctggatctgttgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtatttt |
22365019 |
T |
|
| Q |
314 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggatcaaaaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22365020 |
catggaattccaaaaaacaagatgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttggataaaaaa |
22365119 |
T |
|
| Q |
414 |
ggtattgagtgatctgaatcatgtacaagaggaatcaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365120 |
ggtattgagtgatctgaatcatgtacaagaggaaccaattgtgctatggtgtgacaacaaatcagctatagcaattgccaaaaatccaattcaacatgga |
22365219 |
T |
|
| Q |
514 |
agaacaa |
520 |
Q |
| |
|
||||||| |
|
|
| T |
22365220 |
agaacaa |
22365226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 405
Target Start/End: Original strand, 22134942 - 22135112
Alignment:
| Q |
235 |
gatagtgattgggctggatctattgatgattctaaaagcacaagtggttatgttttttcacttggtagtggtgtattttcatggaattccaaaaaacaag |
334 |
Q |
| |
|
|||||||||||||||||| | |||||||||| || ||||| |||||||||||||||| |||| | |||| | || || ||||| || || ||||| | |
|
|
| T |
22134942 |
gatagtgattgggctggaagtgttgatgattccaagagcacttctggttatgttttttcatttggcaatggtattttctcttggaagtcaaagaaacagg |
22135041 |
T |
|
| Q |
335 |
atgtggttgctcaatcctcagctgaagctgagtatattgctgctgcagctgcatcaaatcaagctatttgg |
405 |
Q |
| |
|
| | || |||||||| | || || ||||| |||||| | || |||||||| |||| |||||||||||| |
|
|
| T |
22135042 |
agattgtagctcaatctacggcagaggctgaatatatttcagcagcagctgctgcaaaccaagctatttgg |
22135112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 22134777 - 22134833
Alignment:
| Q |
73 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
129 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
22134777 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
22134833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 17387577 - 17387521
Alignment:
| Q |
73 |
agaccagatttgatgttctctgctagtttgctttctaggttcatgcattcaccaagt |
129 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||| ||||| ||||| || |||||| |
|
|
| T |
17387577 |
agaccagatttgatgttttctacaagtttgctttcaaggtttatgcaatctccaagt |
17387521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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