View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_10 (Length: 445)
Name: NF0684_high_10
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 7 - 436
Target Start/End: Original strand, 43895143 - 43895573
Alignment:
| Q |
7 |
caagatgcctttgtatttcaatgaagaagatgtttgagcttgtaatcttgtctttataacatctgcagggtagttgaaaagccaacttgctatcccctgc |
106 |
Q |
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| T |
43895143 |
caagatgcctttgtatttcaatgaagaagatgtttgagcttgtaatcttgtctttataacatctgtagggtagttgaaaagccaacttgctatcccctgc |
43895242 |
T |
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| Q |
107 |
tacaaacatagtactgacacactttcttcacaactttctctgcaaccagggtgaagtttctcc-tagtgtactcatatatgtcccaaagtataaggcaag |
205 |
Q |
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| T |
43895243 |
tacaaacatagcactcacacactttcttcacaactttctctgcaaccagggtgaagtttctccctagtgtactcatatatgtcccaaagtataaggcaag |
43895342 |
T |
|
| Q |
206 |
agcaggtgtgtctctaagaacagtgatacctaatcctcgataaattaatgccgcgaaggccctcattagtgttatcatacatcattagtgttagttaaaa |
305 |
Q |
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| T |
43895343 |
agcaggtgtgtctctaagaacagtgataccaaatcctcgataaattaatgccgcgaaggccctaattagtgttatcatacatcattagtgttagttaaaa |
43895442 |
T |
|
| Q |
306 |
cactcctccaagtactaaccatgaattgtttcaagtggtaaggtactcgaatcttttaaatatgtagtcagacatttgattattgacaatgtatatggaa |
405 |
Q |
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| T |
43895443 |
cactcctccaagtactaaccatgaattgtttcaagtggtaaggtactcgaatcttttaaatatgtagtcagacatttgattattgacaatgtatatggaa |
43895542 |
T |
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| Q |
406 |
aaaatttagttgtgtgacccacaggttctgc |
436 |
Q |
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| T |
43895543 |
aaaatttagttgtgtgacccaaaggttctgc |
43895573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 43892048 - 43892299
Alignment:
| Q |
7 |
caagatgcctttgtatttcaatgaagaagatgtttgagcttgtaatcttgtctttataacatctgcagggtagttgaaaagccaacttgctat------- |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
43892048 |
caagatgcctttgtatttcaatgaagaagatgtttgagcttgtaatcttgtctttataacatctgtagggtagttgaaaagccaactagctatccctgcc |
43892147 |
T |
|
| Q |
100 |
----cccctgctacaaacatagtactgacacactttcttcacaactttctctgcaaccagggtgaagtttctc-ctagtgtactcatatatgtcccaaag |
194 |
Q |
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||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||||| || |||||||| |||||| ||||| |
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| T |
43892148 |
aatccccctgctataaacatagtact--cacactttcttgacaactttctctacaaccaggatgaagtttctctcttgtgtactc--atatgttccaaaa |
43892243 |
T |
|
| Q |
195 |
tataaggcaagagcaggtgtgtctctaagaacagtgatacctaatcctcgataaat |
250 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
43892244 |
tataaggcaagagcaggtgcatctctaagaacagtgatgccaaatcctcgataaat |
43892299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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