View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_high_13 (Length: 436)

Name: NF0684_high_13
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_high_13
NF0684_high_13
[»] chr6 (2 HSPs)
chr6 (98-426)||(31103030-31103363)
chr6 (343-403)||(6701533-6701593)
[»] chr7 (5 HSPs)
chr7 (347-416)||(22265766-22265835)
chr7 (366-416)||(16830997-16831047)
chr7 (361-414)||(43098185-43098238)
chr7 (347-414)||(23331227-23331294)
chr7 (364-412)||(3332050-3332098)
[»] scaffold0086 (1 HSPs)
scaffold0086 (351-416)||(46696-46761)
[»] chr4 (2 HSPs)
chr4 (343-414)||(10168673-10168744)
chr4 (355-414)||(24107343-24107402)
[»] chr1 (2 HSPs)
chr1 (361-414)||(11661742-11661795)
chr1 (343-403)||(24499558-24499618)
[»] chr8 (1 HSPs)
chr8 (367-413)||(13016845-13016891)
[»] chr5 (1 HSPs)
chr5 (366-414)||(17606333-17606381)
[»] chr2 (1 HSPs)
chr2 (350-418)||(1149075-1149143)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 98 - 426
Target Start/End: Original strand, 31103030 - 31103363
Alignment:
Q  98 gtaaatgcttctattgtaatggtaaaggataaatgcaacaatgattgtatataattaaatcaactaaaaattaaattttatcatatttttggtatagtcc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31103030 gtaaatgcttctattgtaatggtaaaggataaatgcaacaatgattgtatataattaaatcaactaaaaattaaattttatgatatttttggtatagtcc 31103129  T
Q  198 ttacacttaattatcttaatttgacttgttattctagaggccctttannnnnnnnnggctaaatttaatatgcatctgttttgatcccttaaatatgcat 297  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||  ||||||| |||||||||||||    
T  31103130 ttatacttaattatcttaatttgacttgttattctagaggcccttta--tttttttggctaaattgaatatgcatcttatttgatctcttaaatatgcat 31103227  T
Q  298 ctgatggtctcaatctgttaattttaacccaaaatgta-------taacaaaattatagatggtccactctaaaccttattaatctatttaattttaatc 390  Q
    ||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31103228 ctgttggtctcaatctgttaattttaacccaaaatgtataaagtgtaacaaaattatagatggtccactctaaatcttattaatctatttaattttaatc 31103327  T
Q  391 atttgatcattttaaaacaaaataaatcatttcatc 426  Q
    ||||||||||||||||||||||||||||||||||||    
T  31103328 atttgatcattttaaaacaaaataaatcatttcatc 31103363  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 403
Target Start/End: Original strand, 6701533 - 6701593
Alignment:
Q  343 attatagatggtccactctaaaccttattaatctatttaattttaatcatttgatcatttt 403  Q
    |||||||||||| |||| || ||||||||||| |||| |||||||  | ||||||||||||    
T  6701533 attatagatggttcactgtagaccttattaatttattcaattttagccctttgatcatttt 6701593  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 22265766 - 22265835
Alignment:
Q  347 tagatggtccactctaaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaataaa 416  Q
    ||||||||||||  |||||||||||||| |||||||| |||| | |||||||||||| ||||||||||||    
T  22265766 tagatggtccacaataaaccttattaatttatttaatattaaacctttgatcattttgaaacaaaataaa 22265835  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 16831047 - 16830997
Alignment:
Q  366 cttattaatctatttaattttaatcatttgatcattttaaaacaaaataaa 416  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  16831047 cttattaatttatataattttaagcatttgatcattttaaaacaaaataaa 16830997  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 43098238 - 43098185
Alignment:
Q  361 taaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaata 414  Q
    ||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  43098238 taaactttattaatttatttaattttaatcctttgatcattttgaaacaaaata 43098185  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 23331294 - 23331227
Alignment:
Q  347 tagatggtccactctaaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaata 414  Q
    |||||| |||||  |||||||||||||| |||||||||||||   |||||||||||| ||| ||||||    
T  23331294 tagatgttccaccgtaaaccttattaatttatttaattttaactctttgatcattttgaaataaaata 23331227  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 3332098 - 3332050
Alignment:
Q  364 accttattaatctatttaattttaatcatttgatcattttaaaacaaaa 412  Q
    ||||||||||| ||||||||||||  | |||||||||||| ||||||||    
T  3332098 accttattaatttatttaattttagccctttgatcatttttaaacaaaa 3332050  T

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Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 46696 - 46761
Alignment:
Q  351 tggtccactctaaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaataaa 416  Q
    ||||||||| || ||||||||||| ||||||||||||    |||||||||||||||||||||||||    
T  46696 tggtccactgtagaccttattaatttatttaattttagcattttgatcattttaaaacaaaataaa 46761  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 414
Target Start/End: Complemental strand, 10168744 - 10168673
Alignment:
Q  343 attatagatggtccactctaaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaata 414  Q
    ||||||||||||||||  || ||||||||||| ||||||||||||  | || ||||||||| ||||||||||    
T  10168744 attatagatggtccaccgtacaccttattaatttatttaattttagcctttagatcattttgaaacaaaata 10168673  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 414
Target Start/End: Original strand, 24107343 - 24107402
Alignment:
Q  355 ccactctaaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaata 414  Q
    ||||| || ||||||||| | |||||||||||| |||||| |||||||||||||||||||    
T  24107343 ccactgtagaccttattactttatttaattttagtcatttaatcattttaaaacaaaata 24107402  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 11661742 - 11661795
Alignment:
Q  361 taaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaata 414  Q
    |||| ||||||||| |||||||||||||   |||||||||||||||||||||||    
T  11661742 taaaacttattaatttatttaattttaactctttgatcattttaaaacaaaata 11661795  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 24499618 - 24499558
Alignment:
Q  343 attatagatggtccactctaaaccttattaatctatttaattttaatcatttgatcatttt 403  Q
    |||||||||||| |||  |||||||||||||| |||| |||||||| | ||||||||||||    
T  24499618 attatagatggttcacgttaaaccttattaatttattcaattttaaccctttgatcatttt 24499558  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 13016891 - 13016845
Alignment:
Q  367 ttattaatctatttaattttaatcatttgatcattttaaaacaaaat 413  Q
    |||||||| |||||||||||||  ||||||||||||||||| |||||    
T  13016891 ttattaatttatttaattttaactatttgatcattttaaaataaaat 13016845  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 17606333 - 17606381
Alignment:
Q  366 cttattaatctatttaattttaatcatttgatcattttaaaacaaaata 414  Q
    ||||||||| ||||||||||||| | |||||| ||||| ||||||||||    
T  17606333 cttattaatttatttaattttaaccttttgattattttgaaacaaaata 17606381  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 418
Target Start/End: Complemental strand, 1149143 - 1149075
Alignment:
Q  350 atggtccactctaaaccttattaatctatttaattttaatcatttgatcattttaaaacaaaataaatc 418  Q
    |||||||||  || ||||||||||| |||||||| |||    || ||||||||||||||||||||||||    
T  1149143 atggtccaccatagaccttattaatttatttaatcttagctcttagatcattttaaaacaaaataaatc 1149075  T

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