View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_high_16 (Length: 420)

Name: NF0684_high_16
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_high_16
NF0684_high_16
[»] chr2 (6 HSPs)
chr2 (34-391)||(43569797-43570170)
chr2 (327-380)||(15370239-15370292)
chr2 (332-380)||(21616581-21616629)
chr2 (330-380)||(22878199-22878249)
chr2 (329-370)||(6561448-6561489)
chr2 (327-379)||(28810368-28810420)
[»] chr8 (6 HSPs)
chr8 (326-380)||(7008699-7008753)
chr8 (337-380)||(6950423-6950466)
chr8 (338-380)||(7648077-7648119)
chr8 (327-380)||(9700102-9700155)
chr8 (324-380)||(2091864-2091920)
chr8 (337-381)||(10560147-10560191)
[»] chr4 (7 HSPs)
chr4 (330-380)||(2811572-2811622)
chr4 (342-381)||(34398615-34398654)
chr4 (332-378)||(1075561-1075607)
chr4 (330-379)||(24193634-24193683)
chr4 (327-368)||(39691065-39691106)
chr4 (329-378)||(41433478-41433527)
chr4 (327-371)||(46714907-46714951)
[»] chr1 (7 HSPs)
chr1 (328-380)||(6231733-6231785)
chr1 (330-380)||(48748514-48748564)
chr1 (327-368)||(2295209-2295250)
chr1 (337-385)||(2522692-2522740)
chr1 (330-378)||(6932881-6932929)
chr1 (337-381)||(15515656-15515700)
chr1 (332-380)||(29793619-29793667)
[»] chr6 (3 HSPs)
chr6 (330-382)||(740805-740857)
chr6 (329-380)||(8010458-8010509)
chr6 (330-378)||(13908343-13908391)
[»] chr5 (2 HSPs)
chr5 (328-380)||(25720334-25720386)
chr5 (327-380)||(40335789-40335842)
[»] chr7 (5 HSPs)
chr7 (337-379)||(529464-529506)
chr7 (331-377)||(7513663-7513709)
chr7 (326-378)||(3610655-3610707)
chr7 (328-380)||(6977517-6977569)
chr7 (328-368)||(19302480-19302520)
[»] chr3 (2 HSPs)
chr3 (326-376)||(28289070-28289120)
chr3 (327-379)||(51929843-51929895)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 34 - 391
Target Start/End: Complemental strand, 43570170 - 43569797
Alignment:
Q  34 atacatatcaaaaacataatgtgatgttattgacactgcccattgcattggacaagaaatacaaaccttcacaagaactagcattagtcgaaacaggtct 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43570170 atacatatcaaaaacataatgtgatgttattgacactgcccattgcattggacaagaaatacaaaccttcacaagaactagcattagtcgaaacaggtct 43570071  T
Q  134 ccagatagaagtcattgctttctgcttattgctatggtcatcaataacaactctcttttttctaccacccattatagaatcacagcttaaaccagaataa 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43570070 ccagatagaagtcattgctttctgcttattgctatggtcatcaataacaactctcttttttctaccacccattatagaatcacagcttaaaccataataa 43569971  T
Q  234 gttctctgtccctgttgcaaacccaaaataaaaaa----------------taagcagagaaattacttcaaaacttttaaacgagcaaatttgttacaa 317  Q
    |||||||||||||||||||||||||||| ||||||                |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43569970 gttctctgtccctgttgcaaacccaaaaaaaaaaaaaaaaaaaaaaaaaattaagcagagaaattacttcaaaacttttaaacgagcaaatttgttacaa 43569871  T
Q  318 ttattataagcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgagaaatgttgataa 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43569870 ttattataagcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgagaaatgttgataa 43569797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 15370239 - 15370292
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    ||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||    
T  15370239 gcctgtttggattgacttatttgagcttatctactggcataagcatttgtgaga 15370292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 21616581 - 21616629
Alignment:
Q  332 tttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||| |||||||||||| || |||||||||| |||||||||||||||||    
T  21616581 tttggattgacttatttcagtttatccactgacataaacatttgtgaga 21616629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 22878249 - 22878199
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||| ||||||||||||||| |||||||||| ||||| || ||||||||    
T  22878249 tgtttggattgacttatttgagcttatccactgacataagcacttgtgaga 22878199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 6561489 - 6561448
Alignment:
Q  329 ctgtttgaattgacttatttgaggttatccactggcataaac 370  Q
    ||||||||||||||||||||||| ||||| || |||||||||    
T  6561489 ctgtttgaattgacttatttgagtttatctacgggcataaac 6561448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 28810368 - 28810420
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgag 379  Q
    ||||||||| ||||||||||||||| || || | ||||||||||| |||||||    
T  28810368 gcctgtttggattgacttatttgagcttctctattggcataaacacttgtgag 28810420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 7008753 - 7008699
Alignment:
Q  326 agcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||||||||||||||||||||||| ||||| |||||||||| || ||||||||    
T  7008753 agcctgtttgaattgacttatttgagtttatctactggcataagcacttgtgaga 7008699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 6950466 - 6950423
Alignment:
Q  337 attgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||    
T  6950466 attgacttatttgagtttatctactggcataaacatttgtgaga 6950423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 7648077 - 7648119
Alignment:
Q  338 ttgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  7648077 ttgacttatttgagcttatccgctggcataaacatttgtgaga 7648119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Complemental strand, 9700155 - 9700102
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    ||||||||| ||| ||||||||||| ||||| ||| ||||||||| ||||||||    
T  9700155 gcctgtttggattaacttatttgagcttatctactagcataaacacttgtgaga 9700102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 2091920 - 2091864
Alignment:
Q  324 taagcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||| ||||||| ||||| ||||||||  ||||||| ||||||||||| ||||||||    
T  2091920 taagactgtttggattgatttatttgatcttatccaatggcataaacacttgtgaga 2091864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 10560191 - 10560147
Alignment:
Q  337 attgacttatttgaggttatccactggcataaacatttgtgagaa 381  Q
    ||||||||| ||||| ||||| |||| ||||||||||||||||||    
T  10560191 attgacttagttgagcttatctactgacataaacatttgtgagaa 10560147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 2811622 - 2811572
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  2811622 tgtttgaattgacttatttgaggttatctactggcataagcatttatgaga 2811572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 34398615 - 34398654
Alignment:
Q  342 cttatttgaggttatccactggcataaacatttgtgagaa 381  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  34398615 cttatttgagtttatccactgacataaacatttgtgagaa 34398654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 1075607 - 1075561
Alignment:
Q  332 tttgaattgacttatttgaggttatccactggcataaacatttgtga 378  Q
    ||||||||| |||||||||| ||||| ||||||||||||| ||||||    
T  1075607 tttgaattggcttatttgagcttatctactggcataaacacttgtga 1075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 24193683 - 24193634
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtgag 379  Q
    |||||| ||||||||||||||| |||||  |||||||||||| |||||||    
T  24193683 tgtttggattgacttatttgagcttatctcctggcataaacacttgtgag 24193634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Original strand, 39691065 - 39691106
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataa 368  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||    
T  39691065 gcctgtttgaattgacttatttgagcttatctactagcataa 39691106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 41433527 - 41433478
Alignment:
Q  329 ctgtttgaattgacttatttgaggttatccactggcataaacatttgtga 378  Q
    ||||||||||||||||||||||| |||||  ||| ||||| |||||||||    
T  41433527 ctgtttgaattgacttatttgagtttatctcctgacataagcatttgtga 41433478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 371
Target Start/End: Original strand, 46714907 - 46714951
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataaaca 371  Q
    |||||||||||||| |||||||||  ||||| |||||||||||||    
T  46714907 gcctgtttgaattggcttatttgaacttatctactggcataaaca 46714951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 6231733 - 6231785
Alignment:
Q  328 cctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||||||||||  ||||||||||||||| ||| ||||||||||||||||||    
T  6231733 cctgtttgaattggtttatttgaggttatctactagcataaacatttgtgaga 6231785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 48748514 - 48748564
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||||||||||||||||||| ||||||| || |||||||| ||||||||    
T  48748514 tgtttgaattgacttatttgagcttatccattgacataaacacttgtgaga 48748564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 2295250 - 2295209
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataa 368  Q
    |||||||||||||| |||||||||| ||||| ||||||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataa 2295209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 2522740 - 2522692
Alignment:
Q  337 attgacttatttgaggttatccactggcataaacatttgtgagaaatgt 385  Q
    ||||||||||||||| ||||| ||||||||||||| |||| ||| ||||    
T  2522740 attgacttatttgagtttatctactggcataaacacttgtaagacatgt 2522692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 6932881 - 6932929
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtga 378  Q
    |||||| ||||||||||||||| |||||||||| || ||||| ||||||    
T  6932881 tgtttgtattgacttatttgagattatccactgacacaaacacttgtga 6932929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 381
Target Start/End: Complemental strand, 15515700 - 15515656
Alignment:
Q  337 attgacttatttgaggttatccactggcataaacatttgtgagaa 381  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||||    
T  15515700 attgacttatttgagcttatctactggcataaacacgtgtgagaa 15515656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 29793619 - 29793667
Alignment:
Q  332 tttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||| ||||||||||||||| ||||| |||| |||||||| ||||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataaacacttgtgaga 29793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 740805 - 740857
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtgagaaa 382  Q
    |||||| ||||||||||||||| ||||| |||| ||| |||||||||||||||    
T  740805 tgtttgtattgacttatttgagattatctactgtcatgaacatttgtgagaaa 740857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 8010509 - 8010458
Alignment:
Q  329 ctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    ||||||| |||||||||| |||| ||||| | ||||||||||||||||||||    
T  8010509 ctgtttggattgacttatgtgagcttatctattggcataaacatttgtgaga 8010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 378
Target Start/End: Complemental strand, 13908391 - 13908343
Alignment:
Q  330 tgtttgaattgacttatttgaggttatccactggcataaacatttgtga 378  Q
    |||||||||||||||||||||  ||||| |||| |||||||| ||||||    
T  13908391 tgtttgaattgacttatttgaacttatctactgacataaacacttgtga 13908343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 25720334 - 25720386
Alignment:
Q  328 cctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    ||||||||||||  |||||||||||||||| |||||||||| || ||||||||    
T  25720334 cctgtttgaattagcttatttgaggttatctactggcataagcacttgtgaga 25720386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 40335789 - 40335842
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    ||||||||| ||||||||||||||| ||||| ||| ||| ||||| ||||||||    
T  40335789 gcctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgaga 40335842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 379
Target Start/End: Complemental strand, 529506 - 529464
Alignment:
Q  337 attgacttatttgaggttatccactggcataaacatttgtgag 379  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||    
T  529506 attgacttatttgagcttatctactggcataaacacttgtgag 529464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 7513709 - 7513663
Alignment:
Q  331 gtttgaattgacttatttgaggttatccactggcataaacatttgtg 377  Q
    ||||||||||||||||||||| ||||| |||||||||| || |||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcacttgtg 7513663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 3610655 - 3610707
Alignment:
Q  326 agcctgtttgaattgacttatttgaggttatccactggcataaacatttgtga 378  Q
    ||||||||||||||| |||||||||| ||||| |||||| ||| || ||||||    
T  3610655 agcctgtttgaattggcttatttgagcttatctactggcctaaccacttgtga 3610707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 6977569 - 6977517
Alignment:
Q  328 cctgtttgaattgacttatttgaggttatccactggcataaacatttgtgaga 380  Q
    |||||||| ||||||||||| ||| ||||| | |||||||| |||||||||||    
T  6977569 cctgtttggattgacttattagagtttatctattggcataagcatttgtgaga 6977517  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 19302480 - 19302520
Alignment:
Q  328 cctgtttgaattgacttatttgaggttatccactggcataa 368  Q
    |||||||||||||||||||||||| ||||| |||| |||||    
T  19302480 cctgtttgaattgacttatttgagcttatctactgacataa 19302520  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 28289070 - 28289120
Alignment:
Q  326 agcctgtttgaattgacttatttgaggttatccactggcataaacatttgt 376  Q
    |||||||||| ||||| |||||||| |||||| ||||||||||||| ||||    
T  28289070 agcctgtttggattgaattatttgatgttatcaactggcataaacacttgt 28289120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 51929895 - 51929843
Alignment:
Q  327 gcctgtttgaattgacttatttgaggttatccactggcataaacatttgtgag 379  Q
    ||||||||| ||||||||||||||| ||||| | | ||||||||| |||||||    
T  51929895 gcctgtttggattgacttatttgagcttatctattagcataaacacttgtgag 51929843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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