View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_21 (Length: 389)
Name: NF0684_high_21
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 22069088 - 22069256
Alignment:
| Q |
213 |
tccactaatacacatctttatttgttttcgtcaaacaacaaaagtattagggtttgtcnnnnnnnnnnnnncacaagtatgagggttcagcgttacagct |
312 |
Q |
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| T |
22069088 |
tccacaaatacacatctttatttgttttcgtcaaacaacaaaagtactagggtttgtcaaaaataaaaaa-cacaagtattagggttcagcgttacagct |
22069186 |
T |
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| Q |
313 |
ccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctcccttcatctca |
382 |
Q |
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| T |
22069187 |
ccaattctccaaaaacggcaccgccttggtaacaacaaaactccaacatgaatctcctccctccatctca |
22069256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 22068872 - 22068946
Alignment:
| Q |
26 |
atcatactacgattaatgtgaagttgaaattttttattttgctatggaaaagatagagtgtacacaaaaaaggag |
100 |
Q |
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| T |
22068872 |
atcatacttcgattaatgtgaagttgaaattttttattttgctatggaaaagatagagtgtacacaaaaaaggag |
22068946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 22068974 - 22069059
Alignment:
| Q |
131 |
tgtttgttggagagaaagtatatcatttgtttgttatagnnnnnnnntatggaatcaaacttatccaaaagagaaaatgtcttcca |
216 |
Q |
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| T |
22068974 |
tgtttgttggagagaaagtatatcaattgtttgttatagaaaaaaaatatggaatgaaacttatccaaaagagaaaatgtcttcca |
22069059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 22062703 - 22062796
Alignment:
| Q |
287 |
aagtatgagggttcagcgttacagctccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctcccttcatctca |
382 |
Q |
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| T |
22062703 |
aagtattagggttcagcgtttcagctccaattcaccaaac--ggcacagcctttgtaacaacaaaactccatcatgaatctcctccctccatctca |
22062796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 22087663 - 22087756
Alignment:
| Q |
287 |
aagtatgagggttcagcgttacagctccaattctccaaaaaaggcaccgcgttggtaacaacaaaactccaacatgaatctcctcccttcatctca |
382 |
Q |
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| T |
22087663 |
aagtattagggttcagcgtttcagctccaattctcc--aaacggcgctgtattggtaataagaaaactccaatatgaatctcctccctccatctca |
22087756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 22087005 - 22087040
Alignment:
| Q |
131 |
tgtttgttggagagaaagtatatcatttgtttgtta |
166 |
Q |
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| T |
22087005 |
tgtttgttggagagaaagtatatcaattgtttgtta |
22087040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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