View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_3 (Length: 603)
Name: NF0684_high_3
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 35 - 589
Target Start/End: Original strand, 42960755 - 42961309
Alignment:
| Q |
35 |
aaatttttgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtc |
134 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960755 |
aaatttgtgtgtcaaaataacaaaactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtc |
42960854 |
T |
|
| Q |
135 |
tgtccaaatccacagctagcttcaatatacacacccttattggtaataccaactgtttctatcaatgattgtttaactgatttcttaagaggaacaaaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960855 |
tgtccaaatccacagctagcttcaatatacacacccttattggtaataccaactgtttctatcaatgattgtttaactgatttcttaagaggaacaaaaa |
42960954 |
T |
|
| Q |
235 |
ttgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgcttttgggccaattcc |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42960955 |
ttgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgcttttgggccaattcc |
42961054 |
T |
|
| Q |
335 |
actgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgctgtttcccattt |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42961055 |
actgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgctgtttcccattt |
42961154 |
T |
|
| Q |
435 |
tcatccttgaaaatcacccccattgcttttggtctttttcctgcaccaatatttagcattactcattttcagtcatcatgtgattgtaaaccatttttaa |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42961155 |
tcatccttgaaaatcacccccattgcttttggtctttttcctgcaccaatatttagcattactcattttcagtcatcatgtgattgtaaaccatttttaa |
42961254 |
T |
|
| Q |
535 |
atgtatgaactgcttaattttcaactaagtacaatttataaggcggttttgtaga |
589 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42961255 |
atgtatgaactgcttaattttcaactaagtacaatttataaggcggttttgtaga |
42961309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 224 - 479
Target Start/End: Complemental strand, 5503759 - 5503504
Alignment:
| Q |
224 |
aggaacaaaaattgtgttcattggattatcagccatacccttcccaacaaatctgttgtcaagtaccacagggattttcaagttctcaagttctgctttt |
323 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||| |||||||||||||| |||| ||| ||||| | ||| |||||||||| |||||| |||| |
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| T |
5503759 |
aggaacaaaaactgtgttcataggattatctatcattcccttcccaacaaaaggattgttaaggaccactgagatgttcaagttctgaagttcatcttta |
5503660 |
T |
|
| Q |
324 |
gggccaattccactgagtaatagcatttgaggagttccaattgccccactagacacaatcacttcactctccctatcatttcctagtattgccttatgct |
423 |
Q |
| |
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|| ||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||| | | |||||||||| | |||||| ||| | |
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| T |
5503659 |
ggaccaattccacttagcaatagcatttgaggagacccaattgccccactagacaatatcacttcactttgcatatcatttcccaaccttgcctcatgtt |
5503560 |
T |
|
| Q |
424 |
gtttcccattttcatccttgaaaatcacccccattgcttttggtctttttcctgca |
479 |
Q |
| |
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|||||||||||||||| |||||||| ||||| |||||||||||||| || |||||| |
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| T |
5503559 |
gtttcccattttcatcattgaaaataacccctattgcttttggtctcttacctgca |
5503504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 35607973 - 35607889
Alignment:
| Q |
58 |
aactcaaattaggtgatgagtgaagacatacctcagctgatagcaaaccatggtggcaatgaatgctatcattggtctgtccaaa |
142 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35607973 |
aactcaaattaggtgatgagtgaagacatatctcagctgacaacaaaccatggtggcaatgaatgctgtcattggtctgtccaaa |
35607889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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