View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_33 (Length: 314)
Name: NF0684_high_33
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 44489737 - 44489458
Alignment:
| Q |
23 |
ggtaaggcaaacattatagttaaatatgacaggagggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataag |
122 |
Q |
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| T |
44489737 |
ggtaaggcaaacattgtagttaaatatgacaggagggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataag |
44489638 |
T |
|
| Q |
123 |
tacagttcacatatctggctggtacattctcccattacatcaaatgaaactgtggtgcacttcttgaatgcaccagggtcatccaatcttttaacataaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44489637 |
tacagttcacatatctggctggtacattctcccattacatcaaatgaaactgtggtgcacctcttgaatgcaccagggtcatccaatcttttaacataaa |
44489538 |
T |
|
| Q |
223 |
gctgcaattatacatcaaaccagtacattacataatttcattnnnnnnnnntataattcatataaactattaattgttcat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44489537 |
gctgcaattatacatcaaaccagtacattacataatttcattaaaaaaaaa-ataattcatataaactattaattgttcat |
44489458 |
T |
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