View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_34 (Length: 308)
Name: NF0684_high_34
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 10412704 - 10412426
Alignment:
| Q |
1 |
ttgcgtcaaaatgaatgactcatttgtnnnnnnnnttgtcttaaaaggaatgataagtaaaaatattaattttctcatttagttatgcctttttaatcta |
100 |
Q |
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| T |
10412704 |
ttgcgtcaaaatgaatgactcatttgtaaaaaaaattgtcttaaaaggaatgataagtaaaaatattaattttctcattcagttatgcctttttaatcta |
10412605 |
T |
|
| Q |
101 |
tgaaaaatgtttaaaaatgtcactcattgcaggacggatagagtaagaaacgaattcaaacaaaaattgtccatgcaattgaatgagcaagaaatataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10412604 |
tgaaaaatgtttaaaaatgtcactcattgcaggacggatggagtaagaaacgaattcaaataaaaattgtccatgcaattgaatgagcaagaaatataaa |
10412505 |
T |
|
| Q |
201 |
ttataaatcataggtcaagggagtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagatt |
279 |
Q |
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|||||||||||||||||| | |||||||| |||||||| ||||| ||||| || ||||||||||||||||||||||||| |
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| T |
10412504 |
ttataaatcataggtcaaagaagtgttataaattaaaggatttcatggttttaggtcaaatgcaatcgaaagatagatt |
10412426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 10410908 - 10410853
Alignment:
| Q |
224 |
tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagatt |
279 |
Q |
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| T |
10410908 |
tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagatt |
10410853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 44782181 - 44782238
Alignment:
| Q |
222 |
agtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagatt |
279 |
Q |
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| T |
44782181 |
agtgttatgaattaaaggattccatggttctaggtcaaatgcaatggaaagatagatt |
44782238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 4847686 - 4847744
Alignment:
| Q |
222 |
agtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattt |
280 |
Q |
| |
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||||||||||||||||| ||| | |||||||| |||||||| ||| ||||||||||||| |
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| T |
4847686 |
agtgttatgaattaaaggattccatggttctaggtcaaatgtaatggaaagatagattt |
4847744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 41874620 - 41874564
Alignment:
| Q |
224 |
tgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagattt |
280 |
Q |
| |
|
|||||||||| |||| ||| | |||||||| |||||||||||| ||||||||||||| |
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|
| T |
41874620 |
tgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatagattt |
41874564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 35673333 - 35673387
Alignment:
| Q |
225 |
gttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagatt |
279 |
Q |
| |
|
|||||||| || || ||| | ||||||||||||||||||||| |||||||||||| |
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|
| T |
35673333 |
gttatgaaatagaggattccatggttctaagtcaaatgcaatggaaagatagatt |
35673387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 15689146 - 15689089
Alignment:
| Q |
222 |
agtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagatt |
279 |
Q |
| |
|
|||||||||||| |||| ||| | || ||||| |||||||||||| |||||||||||| |
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|
| T |
15689146 |
agtgttatgaatcaaaggattccatgattctaggtcaaatgcaatggaaagatagatt |
15689089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 14007850 - 14007794
Alignment:
| Q |
223 |
gtgttatgaattaaagaatttcgtggttctaagtcaaatgcaatcgaaagatagatt |
279 |
Q |
| |
|
||||||||||| |||| ||| | |||||||| |||||||||||| ||||||| |||| |
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|
| T |
14007850 |
gtgttatgaatcaaaggattccatggttctaggtcaaatgcaatggaaagatggatt |
14007794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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