View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_44 (Length: 280)
Name: NF0684_high_44
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 271
Target Start/End: Complemental strand, 7095882 - 7095646
Alignment:
| Q |
30 |
aaaagttatttgt-acatttttgaagaacattgatttatgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattga |
128 |
Q |
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| T |
7095882 |
aaaagttatttgtgacatttttgaagaacattgatttatgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattga |
7095783 |
T |
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| Q |
129 |
tatggtatagatctccaattcctaaaatattctaacatatatttcttgatttcattttcaatttattgattcggcagtccagattctgtgtatagtgttg |
228 |
Q |
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| T |
7095782 |
tatggtatagatctccaattcctaaaatattctaacatatattttttgatttcattttcaatttattgattcaacagtccagattctgtgtatagtgttg |
7095683 |
T |
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| Q |
229 |
ttgaacatgaacatttacactgactgtttatctttatattttt |
271 |
Q |
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|||| ||||||||||||||||||||| ||| ||||||| |
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| T |
7095682 |
ttga------acatttacactgactgtttatttttctattttt |
7095646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 7585252 - 7585350
Alignment:
| Q |
83 |
cagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcctaaaatattctaacatatatttcttgatttca |
182 |
Q |
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| T |
7585252 |
cagatgatcattatcgtgtctctacttccattgatgctgaaattgatatggtatggatctccaattcct--aatactttaacatagatttcttgatttca |
7585349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 7105547 - 7105479
Alignment:
| Q |
194 |
ttgattcggcagtccagattctgtgtatagtgttgttgaacatgaacatttacactgactgtttatctttatatt |
268 |
Q |
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| T |
7105547 |
ttgattcaacagtccagattctgtgtatagtgttgttga------acatttacactgactgtttatttttctatt |
7105479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 30680567 - 30680642
Alignment:
| Q |
67 |
tgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct |
142 |
Q |
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| T |
30680567 |
tgtcaaccttatgggtcagattatcgttatcgcatctccacttccgttgatgctggtattgatatggtatagatct |
30680642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 29611684 - 29611812
Alignment:
| Q |
64 |
ttatgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcctaaaatattctaa |
163 |
Q |
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| T |
29611684 |
ttatgccaaccttatgggtccgattatcgttattgcatctccacttcaattaatgctggaattgacatggtacagatcttcagtccctgtaatattttaa |
29611783 |
T |
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| Q |
164 |
catatatttcttgatttcattttcaattt |
192 |
Q |
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| T |
29611784 |
catagattgcttgatttcattttaaattt |
29611812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 30056637 - 30056578
Alignment:
| Q |
83 |
cagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatct |
142 |
Q |
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| T |
30056637 |
cagattatcgttatcgcgtttccacttccattgatgctggtattgatatggtatagatct |
30056578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 30203645 - 30203559
Alignment:
| Q |
64 |
ttatgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattcc |
150 |
Q |
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| T |
30203645 |
ttatgccaaccttatgcgtcagattatcattctcgcgtctccactctcatggatgctggaatagatatggtatagatcttcaattcc |
30203559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 30432796 - 30432710
Alignment:
| Q |
66 |
atgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaattccta |
152 |
Q |
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| T |
30432796 |
atgtcaaccttattggtcatattatcgttatcgcgtctccactttcgttaatgctggtattgatatggtatagatcttcaattccta |
30432710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 20302781 - 20302863
Alignment:
| Q |
66 |
atgtcaaccatatgggccagatgatcattatcgcgtctctacttccattggtgctggaattgatatggtatagatctccaatt |
148 |
Q |
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| T |
20302781 |
atgtcaacctgatgggtcagattatcgttatcgcgtctacacttccgttgatgctggtattgatatggtatagaacttcaatt |
20302863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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