View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_57 (Length: 250)
Name: NF0684_high_57
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_57 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 8379272 - 8379041
Alignment:
| Q |
20 |
gacatcatcattcattcaaggactaatcgtcactgtcttccctaaatgtgtg--tttgtgtcgatataatccctaaatctatcaaaattacnnnnnnntt |
117 |
Q |
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| T |
8379272 |
gacaccatcattcattcaaggactaatcgtcactgtcttccctaaatgtgtgcgtttgtgtcgatataatccctaaatctatcaaaattacaaaaaaat- |
8379174 |
T |
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| Q |
118 |
attcatgagtatgccttccattggtaatttcatgcatagactataaaccgaccaacaaaagacatatgaagactataacctaaccgacgaaagacacaag |
217 |
Q |
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| T |
8379173 |
attcatgagtatgccttccattagtatttccatgcatagactataaaccgaccaacaaaagacatatgaagactataacctaaccgacgaaagacacatg |
8379074 |
T |
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| Q |
218 |
taaagaccaaactgactaataaaagaaacattc |
250 |
Q |
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| T |
8379073 |
taaagaccaaactgactaataaaagaaacattc |
8379041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 11558511 - 11558479
Alignment:
| Q |
75 |
gtgtcgatataatccctaaatctatcaaaatta |
107 |
Q |
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| T |
11558511 |
gtgtcgatataatccctaaatgtatcaaaatta |
11558479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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