View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_58 (Length: 246)
Name: NF0684_high_58
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_58 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 50609494 - 50609712
Alignment:
| Q |
18 |
aaccacaaacaccccaaattcatccaataactttgtcattggggtatttacaagtagagcactctgacacaggcacaaccaccattttctcaacatttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50609494 |
aaccacaaacaccccaaattcatccaataactttgtcattggggtatttacaagtagagcacactgacacaggcacaaccaccattttctcaacatttga |
50609593 |
T |
|
| Q |
118 |
atctctactctcggtcaatatcttctatcacataaatgcaatatttaaaagctcaccaaataccaaacttcttccaccaagttaaaaaacattttcacac |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50609594 |
atctcttctctcggtcaatatcttctatcacataaatgcaatatttaaatgcttaccaaataccaaacttctttcaccaagttaaaaaacattttcacac |
50609693 |
T |
|
| Q |
218 |
acaataattaatctctctg |
236 |
Q |
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|||||||||||||| |||| |
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| T |
50609694 |
acaataattaatctgtctg |
50609712 |
T |
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