View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_high_67 (Length: 216)

Name: NF0684_high_67
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_high_67
NF0684_high_67
[»] chr6 (4 HSPs)
chr6 (1-199)||(15948545-15948743)
chr6 (33-110)||(7092474-7092551)
chr6 (33-110)||(8802419-8802496)
chr6 (43-182)||(19498171-19498310)
[»] scaffold0530 (1 HSPs)
scaffold0530 (1-199)||(9555-9752)
[»] scaffold0009 (1 HSPs)
scaffold0009 (30-199)||(11310-11479)
[»] scaffold1460 (1 HSPs)
scaffold1460 (4-110)||(1310-1416)
[»] scaffold0114 (1 HSPs)
scaffold0114 (4-110)||(13623-13729)
[»] chr8 (3 HSPs)
chr8 (4-110)||(25750808-25750914)
chr8 (4-110)||(28164063-28164169)
chr8 (61-110)||(21278546-21278595)
[»] chr5 (2 HSPs)
chr5 (34-140)||(8722520-8722626)
chr5 (70-111)||(20585539-20585580)
[»] chr3 (4 HSPs)
chr3 (34-140)||(15787853-15787959)
chr3 (64-111)||(8970552-8970599)
chr3 (4-110)||(2437456-2437562)
chr3 (4-110)||(34932997-34933103)
[»] chr2 (1 HSPs)
chr2 (70-110)||(21087170-21087210)


Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 15948743 - 15948545
Alignment:
Q  1 ggtgacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacaca 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  15948743 ggtgacaaagggtcaccttgtcgtaatcctctccctgggatgataggacctaccatgtccttgttcacaataaccgagtagtcaactgtttcaacacaca 15948644  T
Q  101 tcataatccaactaatgcacttgtcagaaaaccccatcttactcatcacatcctttaggtagggccaatctatcctatcataaactttgatgatgtcca 199  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  15948643 tcataatccaactaatccacttgtcagaaaaccccaacttactcatcacatcctttaggtaggaccaatctatcctatcataagctttgttgatgtcca 15948545  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 7092474 - 7092551
Alignment:
Q  33 ccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatcataatcca 110  Q
    |||||||||||||||||| ||||| || ||||||||||| ||| |||||| ||||| ||| ||||||||||| |||||    
T  7092474 ccctgggatgataggacccaccatatctttgttcacaatgactaagtagtcaactgattctacacacatcatgatcca 7092551  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 8802496 - 8802419
Alignment:
Q  33 ccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatcataatcca 110  Q
    |||||||||||||||||| ||||| || |||||| |||| ||| |||||| || || ||| |||||||||||||||||    
T  8802496 ccctgggatgataggacccaccatatctttgttcgcaatgactaagtagtcaattgattctacacacatcataatcca 8802419  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 182
Target Start/End: Complemental strand, 19498310 - 19498171
Alignment:
Q  43 ataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatcataatccaactaatgcacttgtcagaaaaccccatcttac 142  Q
    ||||| || ||||| || || |||||||||||||| || | ||||||||| ||||||||||||| |||   ||| ||||| ||||| || ||||||||      
T  19498310 ataggtcccaccatttctttattcacaataactgaataatcaactgtttctacacacatcataagccattaaatccacttatcagataatcccatcttgt 19498211  T
Q  143 tcatcacatcctttaggtagggccaatctatcctatcata 182  Q
     ||| |||||||| || |||| ||| || || ||||||||    
T  19498210 gcataacatccttgagataggaccagtcaattctatcata 19498171  T

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Target: scaffold0530 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 9752 - 9555
Alignment:
Q  1 ggtgacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacaca 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  9752 ggtgacaaagggtcaccttgtcgtaatcctctccctgggatgataggacctaccatgtccttgttcacaataaccgagtagtcaactgttttaacacaca 9653  T
Q  101 tcataatccaactaatgcacttgtcagaaaaccccatcttactcatcacatcctttaggtagggccaatctatcctatcataaactttgatgatgtcca 199  Q
    |||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  9652 tcataatccaactaatccacttgtgagaaaa-cccatcttactcatcgcatcctttaggtagggccaatctatcctatcataagctttgctgatgtcca 9555  T

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Target: scaffold0009 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 11479 - 11310
Alignment:
Q  30 tctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatcataatccaactaatgcacttgtcagaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  11479 tctccctgggatgataggacctaccatgtccttgttcacaataaccgagtagtcaactgtttcaacacacatcataatccaactaatccacttgtcagaa 11380  T
Q  130 aaccccatcttactcatcacatcctttaggtagggccaatctatcctatcataaactttgatgatgtcca 199  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  11379 aaccccaacttactcatcacatcctttaggtaggaccaatctatcctatcataagctttgctgatgtcca 11310  T

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Target: scaffold1460 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1460
Description:

Target: scaffold1460; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 1310 - 1416
Alignment:
Q  4 gacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatca 103  Q
    ||||| || ||||||||||||| ||| |  ||||| |||||||| || ||||| || || ||||||||||| ||||||| ||||||||||||||||||||    
T  1310 gacaatggatcaccttgtcgtagtccacgtcctggaatgatagggccaaccatctctttattcacaataacagagtagtcaactgtttcaacacacatca 1409  T
Q  104 taatcca 110  Q
     ||||||    
T  1410 caatcca 1416  T

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Target: scaffold0114 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 13623 - 13729
Alignment:
Q  4 gacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatca 103  Q
    ||||| |||||||||||||||| ||| |  ||||| |||||||| || ||||| || || ||||||||||| || |||| ||||||||| ||||||||||    
T  13623 gacaatgggtcaccttgtcgtagtccaccacctggaatgatagggccaaccatctctttattcacaataacagaatagtcaactgtttctacacacatca 13722  T
Q  104 taatcca 110  Q
    |||||||    
T  13723 taatcca 13729  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 25750808 - 25750914
Alignment:
Q  4 gacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatca 103  Q
    ||||| |||||||||||||||| ||| |  ||||| |||||||| || ||||| || || ||||||||||| || |||| ||||||||| ||||||||||    
T  25750808 gacaatgggtcaccttgtcgtagtccacgacctggaatgatagggccaaccatctctttattcacaataacagaatagtcaactgtttctacacacatca 25750907  T
Q  104 taatcca 110  Q
    |||||||    
T  25750908 taatcca 25750914  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 28164063 - 28164169
Alignment:
Q  4 gacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatca 103  Q
    ||||||||||||||||||| || ||| |  ||||| |||||||| || ||||| || || ||||||||||| || |||||||||||||| ||||||||||    
T  28164063 gacaaagggtcaccttgtcatagtccacgacctggaatgatagggccaaccatctctttattcacaataacagaatagttaactgtttcgacacacatca 28164162  T
Q  104 taatcca 110  Q
     ||||||    
T  28164163 caatcca 28164169  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 21278546 - 21278595
Alignment:
Q  61 ttgttcacaataactgagtagttaactgtttcaacacacatcataatcca 110  Q
    ||||| |||||||| ||||| | ||| |||||||||||||||||||||||    
T  21278546 ttgttaacaataacagagtaatcaacagtttcaacacacatcataatcca 21278595  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 8722626 - 8722520
Alignment:
Q  34 cctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatcataatccaactaatgcacttgtcagaaaacc 133  Q
    ||||| || ||||| || ||||| || || |||||||||||||| |||| ||| ||||| |||||||||||||||||   ||| ||||| |||||||| |    
T  8722626 cctggaataataggccccaccatttctttattcacaataactgaatagtcaaccgtttctacacacatcataatccattgaatccacttatcagaaaaac 8722527  T
Q  134 ccatctt 140  Q
    |||||||    
T  8722526 ccatctt 8722520  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 20585580 - 20585539
Alignment:
Q  70 ataactgagtagttaactgtttcaacacacatcataatccaa 111  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  20585580 ataactgagtagtcaactgtttccacacacatcataatccaa 20585539  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 15787959 - 15787853
Alignment:
Q  34 cctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatcataatccaactaatgcacttgtcagaaaacc 133  Q
    ||||| || ||||| || ||||| || || |||||||||||||| |||| ||| ||||| |||||||||||||||||   ||| ||||| |||||||| |    
T  15787959 cctggaataataggccccaccatttctttattcacaataactgaatagtcaaccgtttctacacacatcataatccattgaatccacttatcagaaaaac 15787860  T
Q  134 ccatctt 140  Q
    |||||||    
T  15787859 ccatctt 15787853  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 8970552 - 8970599
Alignment:
Q  64 ttcacaataactgagtagttaactgtttcaacacacatcataatccaa 111  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  8970552 ttcagaataactgagtagtcaactgtttctacacacatcataatccaa 8970599  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 2437562 - 2437456
Alignment:
Q  4 gacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatca 103  Q
    |||||||||||||||||||| | ||| |  || || || ||||| || ||||| || || ||||||||||| || ||||  ||||| |||||||||||||    
T  2437562 gacaaagggtcaccttgtcgaagtccacgtcccggaataatagggccaaccatctctttattcacaataacagaatagtcgactgtctcaacacacatca 2437463  T
Q  104 taatcca 110  Q
    |||||||    
T  2437462 taatcca 2437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 34933103 - 34932997
Alignment:
Q  4 gacaaagggtcaccttgtcgtattcctctccctgggatgataggacctaccatgtccttgttcacaataactgagtagttaactgtttcaacacacatca 103  Q
    |||||||||||||||| ||||| ||| |   |||| |||||||| || ||||| |  || ||||||||||| || |||| ||| || || ||||||||||    
T  34933103 gacaaagggtcaccttttcgtagtccacggtctggaatgatagggccaaccatctttttattcacaataacagaatagtcaacagtctctacacacatca 34933004  T
Q  104 taatcca 110  Q
    |||||||    
T  34933003 taatcca 34932997  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 21087170 - 21087210
Alignment:
Q  70 ataactgagtagttaactgtttcaacacacatcataatcca 110  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  21087170 ataactaagtagtcaactgtttccacacacatcataatcca 21087210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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