View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_high_74 (Length: 204)
Name: NF0684_high_74
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_high_74 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 33581007 - 33581154
Alignment:
| Q |
34 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
133 |
Q |
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| T |
33581007 |
aaaggagatgtcttttcttgaaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactt |
33581106 |
T |
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| Q |
134 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagt |
181 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33581107 |
aacctcggtagtctccttcaattgacaaagcctttgcaagctgtgagt |
33581154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 32356315 - 32356462
Alignment:
| Q |
34 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
133 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
32356315 |
aaaggagatgtcttttcttgtagcctttcactactaacctgcaactctgggtagcgtacttcagtagcacaggcatatccacattctaaggcggagattg |
32356414 |
T |
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| Q |
134 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagt |
181 |
Q |
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| T |
32356415 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagt |
32356462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 17922281 - 17922397
Alignment:
| Q |
65 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgacaaagc |
164 |
Q |
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|||||||||||| ||||||||| |||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||| ||| |
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| T |
17922281 |
aactaacctgcatctctgggtagggtactttactagcacagacatatccacgttctatggccgagactgaaccccggtagtctccttcagttgacagagc |
17922380 |
T |
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| Q |
165 |
atttgcaagctgtgagt |
181 |
Q |
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||||||||||||||||| |
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| T |
17922381 |
atttgcaagctgtgagt |
17922397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 8024603 - 8024690
Alignment:
| Q |
65 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttc |
152 |
Q |
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||||||||||||| ||||||||| |||||| || ||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||| |
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| T |
8024603 |
aactaacctgcaactctgggtagggtactttagtagcacagacatatccacgttctaaggccgagactgaaccctggtagtctccttc |
8024690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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