View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0684_low_1 (Length: 731)
Name: NF0684_low_1
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_1 |
 | |
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| [»] chr8 (5 HSPs) |
| |
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| [»] scaffold0415 (2 HSPs) |
| | |
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| [»] scaffold0559 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 30 - 731
Target Start/End: Original strand, 40812337 - 40813036
Alignment:
| Q |
30 |
cacctttcttgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccatac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40812337 |
cacctttcttgtcatagttatcaactcgataaacgatgttaccctttgaatcatagacagtgcaaccattggagtggagaacaagtgatttcatccatac |
40812436 |
T |
|
| Q |
130 |
agtatatgtttctcttttattagacctgctgatgagacaatcagaggatgtggattcttgatgtggatgaaccttggccattttttgttactattatgat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
40812437 |
agtatatgtttctcttttattagacctgctgatgagagaatcagaggatgtggattcttgatgtggatgaactttggccattttttgttactattatgat |
40812536 |
T |
|
| Q |
230 |
tgtgatattcaagaggattgagcttctattaattggagtatgttttgatttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40812537 |
tgtgatattcaagaggattgagcttctattaattggtgtatgttttgatttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcct |
40812636 |
T |
|
| Q |
330 |
acactaacttgcctgtttcttagaagcacctttttggaaataataattcagttcaatgtactcgtggaaaaagtgattcaaattagttagttgctaactg |
429 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
40812637 |
acactaacttggctgtttcttagaagcgcctttttggaaataataattcagttcaatgtactcgtggaaaaagtgattcaaattagttaattagtaactg |
40812736 |
T |
|
| Q |
430 |
cgtgacaagttcaaacccccggagttttcaaccaactttttcttattgannnnnnnatgggnnnnnnnntatccttatgcacaaatgtagagacaaatta |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40812737 |
agtgacaagttcaaacccccggagttttcaaccaacttgttcttattgatttttttatgggaaaaaaaatatccttatgcacaaatgtagagacaaatta |
40812836 |
T |
|
| Q |
530 |
tttgagataaattcctctnnnnnnnnntaagtaactgagatcaattcaaggagttcatctctttcaacatgtgtttttcatatgcaattgttagagattg |
629 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
40812837 |
tttgagataaattcc-ct-taaaaaaataagtaactgagatcaattcaaggagttcatctctttcaacatgtgtttttcatatgcagttgttagagattg |
40812934 |
T |
|
| Q |
630 |
aatctacgaacaaatggttaaaagactctaccataccacgttgatagttctgacatacgcaccatcatgccaaacacatgctttatgtgggtcgagcatt |
729 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40812935 |
aatctacgaacaaatggttaaaagacactaccataccacgttgatagttctgacatacgcaccatcatgccaaacacatgctttatgtggatcgagcatt |
40813034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 31 - 330
Target Start/End: Original strand, 40817497 - 40817814
Alignment:
| Q |
31 |
acctttcttgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccataca |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40817497 |
accttttttgtcatagttatcaactcgataaacgatgttaccgtttgaatcatagacagtgcaaccattggagtgaagaacaagtgatttcatccataca |
40817596 |
T |
|
| Q |
131 |
gtatatgtttctcttttattagacctgctgatgagacaat------------cagag---gatgtggattcttgatgtggatgaaccttggccatttttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | ||||| | |||||||||||| || |||| || |||||||| ||| |
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|
| T |
40817597 |
gtatatgtttctcttttattagacctgctgatatgacactgatcattagacacagagcatgctgtggattcttgttgaggataaattctggccattcttt |
40817696 |
T |
|
| Q |
216 |
gttactattatgattgtgatattcaagaggattgagcttct-attaattggagtatgttttgatttttgaaagaagtgtggtgatcaacagcttatt--t |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| | ||||| | || |||||| | |
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|
| T |
40817697 |
tttactattgtgattgtgatattcaagaggattgagcttataattaattgttgtatgttttgatttttgaaagaagaggagtgattagcaacttatttat |
40817796 |
T |
|
| Q |
313 |
atatgcctaatgttccta |
330 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40817797 |
atatgcctaatgttccta |
40817814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 40807241 - 40807380
Alignment:
| Q |
31 |
acctttcttgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccataca |
130 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40807241 |
accttttttgtcgtagttatcaacacgataaacgatgttaccctttgaatcatagacagtgcaaccattggagtgtagaacaagtgatttcatccataca |
40807340 |
T |
|
| Q |
131 |
gtatatgtttctcttttattagacctgctgatgagacaat |
170 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
40807341 |
gtatatctctctcttttattagacctgctgatgagacaat |
40807380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 40805653 - 40805865
Alignment:
| Q |
39 |
tgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatgt |
138 |
Q |
| |
|
|||||||||| |||||||| |||| ||||| ||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
40805653 |
tgtcatagttttcaactcggtaaacgatgtcaccatttgaatcataggcagtacaaccattggagtgaagaacaagtgatttcatccatacagtatacgt |
40805752 |
T |
|
| Q |
139 |
ttctcttttattagacctgctgatgagacaatcagaggatgtggattcttgatgtggatgaaccttggccattttttgttactattatgattgtgatatt |
238 |
Q |
| |
|
||||||||||||||| ||| | ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40805753 |
ttctcttttattagagatgcagttga---------------tggattcttgatgtggataaactttggccattttttgttactattatgattgtgatatt |
40805837 |
T |
|
| Q |
239 |
caagaggattgagcttct-attaattgg |
265 |
Q |
| |
|
||||||||| ||||||| ||||||||| |
|
|
| T |
40805838 |
caagaggatcaagcttctaattaattgg |
40805865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 40826166 - 40826278
Alignment:
| Q |
39 |
tgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatgt |
138 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
40826166 |
tgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgt |
40826265 |
T |
|
| Q |
139 |
ttctcttttatta |
151 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40826266 |
ttctcttttatta |
40826278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 31 - 473
Target Start/End: Complemental strand, 14867 - 14423
Alignment:
| Q |
31 |
acctttcttgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccataca |
130 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14867 |
accttttttgtcatagttatcaactcgataaacgatgttaccgtttgaatcatagacagtgcaaccattggagtgaagaacaagtgatttcatccataca |
14768 |
T |
|
| Q |
131 |
gtatatgtttctcttttattagacctgctgatgagacaatcagaggatgtggattcttgatgtggatgaaccttggccatt-ttttgttactattatgat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
14767 |
gtatatgtttctcttttattagacctgctgatgagagaatcagaggatgtggattcttgatgtggatgaactttggccatttttttgttactattatgat |
14668 |
T |
|
| Q |
230 |
tgtgatattcaagaggattgagcttctattaattggagtatgttttga-tttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14667 |
tgtgatattcaagaggattgagcttctattaattggtgtatgttttgattttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcc |
14568 |
T |
|
| Q |
329 |
tacactaacttgcctgtttcttagaagcacctttttggaaataataattcagttcaatgtactcgtgg-aaaaagtgattcaaattagttagttgctaac |
427 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
14567 |
tacactaacttggctgtttcttagaagcgcctttttggaaataataattcagttcaatgtactcgtggaaaaaagtgattcaaattagttaattagtaac |
14468 |
T |
|
| Q |
428 |
tgcgtgacaagttcaaacccccggagttttcaaccaactttttctt |
473 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
14467 |
tgagtgacaagttcaaa-ccccggagttttcaaccaacttgttctt |
14423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 536
Target Start/End: Complemental strand, 14393 - 14356
Alignment:
| Q |
499 |
tatccttatgcacaaatgtagagacaaattatttgaga |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14393 |
tatccttatgcacaaatgtagagacaaattatttgaga |
14356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 97; Significance: 3e-47; HSPs: 3)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 7378 - 7246
Alignment:
| Q |
38 |
ttgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatg |
137 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7378 |
ttgtcgtagttatcaacacgataaacgatgttaccctttgaatcatagacagtgcaaccattggagtgtagaacaagtgatttcatccatacagtatatc |
7279 |
T |
|
| Q |
138 |
tttctcttttattagacctgctgatgagacaat |
170 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
7278 |
tctctcttttattagacctgctgatgagacaat |
7246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 3736 - 3848
Alignment:
| Q |
39 |
tgtcatagttatcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatgt |
138 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
3736 |
tgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgatttcatccacacagtatatgt |
3835 |
T |
|
| Q |
139 |
ttctcttttatta |
151 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3836 |
ttctcttttatta |
3848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 8980 - 8778
Alignment:
| Q |
50 |
tcaactcgataaatgatgttaccatttgaattataaacagtgcaaccattggagtggagaacaagtgatttcatccatacagtatatgtttctcttttat |
149 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8980 |
tcaactcggtaaacgatgtcaccatttgaatcataggcagtacaaccattggagtgaagaacaagtgatttcatccatacagtatacgtttctcttttat |
8881 |
T |
|
| Q |
150 |
tagacctgctgatgagacaatcagaggatgtggattcttgatgtggat-gaaccttggccattttttgttactattatgattgtgatattcaagaggatt |
248 |
Q |
| |
|
|||| ||| | ||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8880 |
tagagatgcagttga---------------tggattcttgatgtggataaaactttggccattttttgttactattatgattgtgatattcaagaggatc |
8796 |
T |
|
| Q |
249 |
gagcttct-attaattgg |
265 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
8795 |
aagcttctaattaattgg |
8778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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