View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_100 (Length: 255)
Name: NF0684_low_100
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 4923966 - 4924185
Alignment:
| Q |
33 |
gtaacctatgagaaacgaagaaaaaagaaacttttaaattaattttggatcaaaatcaaaagcatatagacacnnnnnnnnnnn-------gtcctatta |
125 |
Q |
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|||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
4923966 |
gtaacctatgagaaacgaagaaaaaataaacttttaatttcattatggatcaaaatcaaaagcatatagacacaaaaaaaaaaaaaaaaaagtcctatta |
4924065 |
T |
|
| Q |
126 |
tatatcctaaagtccaccaatttggtcttgtagcaacatgaatcgtgtatttgtttatcttgtagcaacatgaattctaagaaagtgataactttgtgct |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4924066 |
tatatcctaaagtccaccaatttggtcttgtagcaacatgaatcgtgtatttgtttatcttgtagcaacatgaattctaagaaagtgataactttgtgct |
4924165 |
T |
|
| Q |
226 |
aatttccttggtctctctgc |
245 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4924166 |
aatttccttggtctctctgc |
4924185 |
T |
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