View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_11 (Length: 510)
Name: NF0684_low_11
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 28 - 500
Target Start/End: Original strand, 19171997 - 19172469
Alignment:
| Q |
28 |
cactaataatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19171997 |
cactaataatatcaacaagaacacttctccttaacctatttgcataaagaacaacactaacaaactcttctatgtaaaccctaacatcatttcccaaaac |
19172096 |
T |
|
| Q |
128 |
agctttccctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtgttcaacgaaacagccttccgcgcgtgtaagcctatcgttaagt |
227 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
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| T |
19172097 |
aactttccctttattatcaccgcgatctttacacgaaaaccagtcaccaacaacgtttttaatgaaacagccttccgcgcgtgtaagcctatcgttaagc |
19172196 |
T |
|
| Q |
228 |
gttggaacgatggacttcaaaccgcactctatttgttccatacgtgttcttagggtttctgatggattcctccatgccatggctatttgccatggacgat |
327 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19172197 |
gttggaacgatggacttcaaaccgcactctatttgctccatacgtgttattagggtttctgatggattcctccacgccatggctatttgccatggacgat |
19172296 |
T |
|
| Q |
328 |
cagaagacattgaaaccgatgaattatcattggtttcggtttcattgtcttcgtcgtcaagaaaagaacgagcaagattggtgaagatgaaaggatggag |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172297 |
cagaagacattgaaaccgatgaattatcattggtttcggtttcattgtcttcgtcgtcaagaaaagaacgagcaagattggtgaagatgaaaggatggag |
19172396 |
T |
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| Q |
428 |
gtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgaggatttgagaagggtctgtg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172397 |
gtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgaggatttgagaagggtctgtg |
19172469 |
T |
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