View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0684_low_112 (Length: 238)
Name: NF0684_low_112
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_112 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 33581007 - 33581138
Alignment:
| Q |
26 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
125 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33581007 |
aaaggagatgtcttttcttgaaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactt |
33581106 |
T |
|
| Q |
126 |
aaccccggtagtctccttcaattgacaaagcc |
157 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
33581107 |
aacctcggtagtctccttcaattgacaaagcc |
33581138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 32356315 - 32356445
Alignment:
| Q |
26 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
125 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
32356315 |
aaaggagatgtcttttcttgtagcctttcactactaacctgcaactctgggtagcgtacttcagtagcacaggcatatccacattctaaggcggagattg |
32356414 |
T |
|
| Q |
126 |
aaccccggtagtctccttcaattgacaaagc |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32356415 |
aaccccggtagtctccttcaattgacaaagc |
32356445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 51805610 - 51805668
Alignment:
| Q |
160 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51805610 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
51805668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 8024603 - 8024690
Alignment:
| Q |
57 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttc |
144 |
Q |
| |
|
||||||||||||| ||||||||| |||||| || ||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
8024603 |
aactaacctgcaactctgggtagggtactttagtagcacagacatatccacgttctaaggccgagactgaaccctggtagtctccttc |
8024690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 20017454 - 20017396
Alignment:
| Q |
160 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| |
|
|
| T |
20017454 |
agctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt |
20017396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 17922281 - 17922376
Alignment:
| Q |
57 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgaca |
152 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
17922281 |
aactaacctgcatctctgggtagggtactttactagcacagacatatccacgttctatggccgagactgaaccccggtagtctccttcagttgaca |
17922376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1378 times since January 2019
Visitors: 4413