View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_116 (Length: 229)
Name: NF0684_low_116
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_116 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 157
Target Start/End: Original strand, 33581007 - 33581138
Alignment:
| Q |
26 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
125 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33581007 |
aaaggagatgtcttttcttgaaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactt |
33581106 |
T |
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| Q |
126 |
aaccccggtagtctccttcaattgacaaagcc |
157 |
Q |
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| T |
33581107 |
aacctcggtagtctccttcaattgacaaagcc |
33581138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 32356315 - 32356445
Alignment:
| Q |
26 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
125 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
32356315 |
aaaggagatgtcttttcttgtagcctttcactactaacctgcaactctgggtagcgtacttcagtagcacaggcatatccacattctaaggcggagattg |
32356414 |
T |
|
| Q |
126 |
aaccccggtagtctccttcaattgacaaagc |
156 |
Q |
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| T |
32356415 |
aaccccggtagtctccttcaattgacaaagc |
32356445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 144
Target Start/End: Original strand, 8024603 - 8024690
Alignment:
| Q |
57 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttc |
144 |
Q |
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| T |
8024603 |
aactaacctgcaactctgggtagggtactttagtagcacagacatatccacgttctaaggccgagactgaaccctggtagtctccttc |
8024690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 20017454 - 20017409
Alignment:
| Q |
160 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgac |
205 |
Q |
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| T |
20017454 |
agctgttgcaagtttttcaacaatccaagctctgaaggaatttgac |
20017409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 17922281 - 17922376
Alignment:
| Q |
57 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgaca |
152 |
Q |
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|||||||||||| ||||||||| |||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||| |
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| T |
17922281 |
aactaacctgcatctctgggtagggtactttactagcacagacatatccacgttctatggccgagactgaaccccggtagtctccttcagttgaca |
17922376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 51805610 - 51805657
Alignment:
| Q |
160 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805610 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacct |
51805657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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