View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0684_low_12 (Length: 480)
Name: NF0684_low_12
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 32 - 467
Target Start/End: Complemental strand, 14175562 - 14175127
Alignment:
| Q |
32 |
ttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
131 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175562 |
ttttgtaaagcgtcgaatacacgacgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
14175463 |
T |
|
| Q |
132 |
atcaagagcatggacagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacaca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175462 |
atcaagagcatggacagagattagatttagacgcaaatctggcacatgtcgcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacaca |
14175363 |
T |
|
| Q |
232 |
tcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| |
|
|
| T |
14175362 |
tcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacattgtaaagaattctttattggaagtag |
14175263 |
T |
|
| Q |
332 |
catgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaac |
431 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14175262 |
cgtgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaacagaaagcaacaccacttccccatcaac |
14175163 |
T |
|
| Q |
432 |
tactggggttgtggtattttcatcttcgtctggtct |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175162 |
tactggggttgtggtattttcatcttcgtctggtct |
14175127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 32 - 467
Target Start/End: Original strand, 28610316 - 28610751
Alignment:
| Q |
32 |
ttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
131 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610316 |
ttttgtaaagcgtcgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
28610415 |
T |
|
| Q |
132 |
atcaagagcatggacagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacaca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28610416 |
atcaagagcatggacagagattagatttagacgcaaatctggcacatgtcgcacgtccttcagtgttagtgtaaaatcggtattggtttgaacacacaca |
28610515 |
T |
|
| Q |
232 |
tcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
28610516 |
tcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtag |
28610615 |
T |
|
| Q |
332 |
catgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaac |
431 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28610616 |
cgtgataagaagctgctgagtcaatgacccattaaacacatgaatctgcaagatgacattcttcttcttcaacagaaagcaacaccacttccccatcaac |
28610715 |
T |
|
| Q |
432 |
tactggggttgtggtattttcatcttcgtctggtct |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
28610716 |
tactggggttgtggtattttcatcttcgtctggtct |
28610751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 32 - 467
Target Start/End: Complemental strand, 12932292 - 12931857
Alignment:
| Q |
32 |
ttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
131 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932292 |
ttttgtaaagcgtcgaatacacgacgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
12932193 |
T |
|
| Q |
132 |
atcaagagcatggacagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacacaca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12932192 |
atcaagagcatggacagagattagatttagacgcaaatctggcacatgtcgcacgttcttcagtgttagtgtaaaaccggtattggtttgaacacacaca |
12932093 |
T |
|
| Q |
232 |
tcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaagaattctttgttggaagtag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
12932092 |
tcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttgtacatcgtaaagaattctttattggaagtag |
12931993 |
T |
|
| Q |
332 |
catgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaagcaacaccacttccccatcaac |
431 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
12931992 |
cgtgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaacagaaaacaacaccacttccccatcaac |
12931893 |
T |
|
| Q |
432 |
tactggggttgtggtattttcatcttcgtctggtct |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931892 |
tactggggttgtggtattttcatcttcgtctggtct |
12931857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 460
Target Start/End: Original strand, 24874193 - 24874624
Alignment:
| Q |
30 |
atttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggct |
129 |
Q |
| |
|
||||||||||||| | | |||||| || |||||| || |||||| | |||||||||| || || | ||||||||||||||||||||||||| ||| ||| |
|
|
| T |
24874193 |
atttttgtaaagcctcggatacacatcgtctctagtaaccatcaatgctcctttggtaggtatc-actttccatcaccaaagttgttttgaagtccagct |
24874291 |
T |
|
| Q |
130 |
aaatcaagagcatggacagagattagatttagacgcaaatctggcacatgtctcacgtccttcagtgttagtgtaaaaccggtattggtttgaacacaca |
229 |
Q |
| |
|
||| ||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| |||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
24874292 |
aaa-caagagcatggacggagattatatttagacgcaaatctagcacatgtcgcacgtcctttagtgttggtgttaaaccgatattggtttgaacacaca |
24874390 |
T |
|
| Q |
230 |
catcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaa---agtctcctactttatacatcgtaaagaattctttgttgga |
326 |
Q |
| |
|
||||| |||||||||||||||| |||| |||| ||| | ||||| |||||||||| ||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
24874391 |
catcattaattccaacaatatctacaatattattgttgtctatcttgactttgccaacaaagtctcctactttgtacatcacaaagaattctttgttgga |
24874490 |
T |
|
| Q |
327 |
agtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaagcaacaccacttcccca |
426 |
Q |
| |
|
||| ||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| | |||||||||||| |||||| ||||||||| || ||||||| |
|
|
| T |
24874491 |
agtggcatgataagaagatgcagagtcaacgacccatataacacatgaatctacaatacgacattcttctttttcaacaaaaagcaacatcatttcccca |
24874590 |
T |
|
| Q |
427 |
tcaactactggggttgtggtattttcatcttcgt |
460 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||| |
|
|
| T |
24874591 |
tcacctactaaggttgtggtattttcatcttcgt |
24874624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 212 - 458
Target Start/End: Original strand, 38996099 - 38996347
Alignment:
| Q |
212 |
tattggtttgaacacacacatcaccaattccaacaatatctgcaatgctattattgcccatctttactttgccaaagtctcctactttatacatcgtaaa |
311 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||| ||||||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
38996099 |
tattggtttaaacacacacatcaccaattccaacaatatttgtaatgctactatttcccatatttactttgtcaaagtctcctgctttgtacatcgtaaa |
38996198 |
T |
|
| Q |
312 |
gaattc-tttgttggaagtagcatgataagaagctgctgagtcaatgacccattcaacacatgaatctgcaacatgacattcttcttcttcaactgaaag |
410 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||| || ||||||||| | |||||||||| ||||| |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
38996199 |
gaattcttttgttggaagtgacatgattagaagatgttgagtcaattatccattcaacaaatgaaactgcaatatggcattcttcttcttcaacataaag |
38996298 |
T |
|
| Q |
411 |
caacaccacttccccatcaactact-ggggttgtggtattttcatcttc |
458 |
Q |
| |
|
|||| |||||||||||| || | | ||||||||||||||||||||||| |
|
|
| T |
38996299 |
caacgccacttccccattaagtgttgggggttgtggtattttcatcttc |
38996347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 38996015 - 38996083
Alignment:
| Q |
76 |
gatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaaatcaagagcatgg |
144 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
38996015 |
gatcctttgataagtttccattttccatcaccaaaattgttttgaaatttagctaaatcaagagcatgg |
38996083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 15290718 - 15290614
Alignment:
| Q |
32 |
ttttgtaaagcgttgaatacacggcgcctctagcaatcatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
131 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290718 |
ttttgtaaagtgtcgaatacacggcgcctctagtaaccatcaacgatcctttggtaagtttccattttccatcaccaaagttgttttgaaatccggctaa |
15290619 |
T |
|
| Q |
132 |
atcaa |
136 |
Q |
| |
|
||||| |
|
|
| T |
15290618 |
atcaa |
15290614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1306 times since January 2019
Visitors: 4413